Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1476 ATGTCTCTCGGAGATGTTGAGGACAGAAAACTTAAGCGCAGGATTGAGGACGAGGAGGAGCTCGAGTCAGAGCATTTTCTGTCGCTAAGTCTGAGGCTTTGCAGTGCATCCTCAGCCAAAGCATTGAAGGAAGCTGGGGGTTCAAGTGTTCCTCCAAAACCAGAGGAAGCGCGCCAATACGCGTGCAGATATTGCAGCAAGAAGTTTTCGAGCTCTCAAGCTCTGGGTGGACACCAAAATGCTCATAGGCGTGAGAGGGTGCTGACCAAGATGGACAGGGAGCTGGGAATGGGCACTTTTGGACACCTTTCACCTCACTTGTGCCCATATTCACCTTATTATCATGATCATAGGGCTCGGACTCACATGATGCATCCCATGTCTTGGCCTCATCAAGGGCTAACCAATTACTCACCCCTCCAAGTCCACCCATTTGGGATTGCCAGTTCTTGGGTTCAAACCAGATTGAATAGCACTGGCAGCTGGAGTGCTGGAATTGGTGGACTGCTTGGGACCCCTTCTCTTGCCAATGCAAATCCTTCTGCGGGAAACCTGCCTTCATCCCCAGGGCTCGACTTGTCACTCAGCCTTTGA 594 0.5135 MSLGDVEDRKLKRRIEDEEELESEHFLSLSLRLCSASSAKALKEAGGSSVPPKPEEARQYACRYCSKKFSSSQALGGHQNAHRRERVLTKMDRELGMGTFGHLSPHLCPYSPYYHDHRARTHMMHPMSWPHQGLTNYSPLQVHPFGIASSWVQTRLNSTGSWSAGIGGLLGTPSLANANPSAGNLPSSPGLDLSLSL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1476 197 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 22 186 IPR044246 GO:0009788
Glsi11g1476 197 SUPERFAMILY beta-beta-alpha zinc fingers 57 88 IPR036236 -
Glsi11g1476 197 Gene3D Classic Zinc Finger 39 96 - -
Glsi11g1476 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Glsi11g1476 197 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Glsi11g1476 197 Pfam C2H2-type zinc finger 60 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1476 Glsi-ChrGlsi11 9313322 9313915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1476 11 128 C2H2 Transcription Factor Family AT5G25160 35.772 6.02e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g1476 zf-C2H2_6 2.6e-06 CL0361