Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1475 ATGAAAAAGATAATAAGGGAGGGAGAGGGATGGGCAACTCCCAGAGACGCTGACGAGGTGTTAGTTAAATATGAAGCAAGGCTAGAGAGTGGGATGCTTGTTTCTGAATCTAATCAAGGTGTAGAGTTTAATATAAGCGATGGCTACCTCTGTCCTGCAATCAGTATCGCAGTAAAAACAATGAGAAAGGGCGAAGAAGCAGAGCTAACTGTAAGATTATTTTATGGTCTCAGACAAAATTCAAACAGAACCAGTGAAATCGTGGATGGTTGTACCCTACAAGATTCTAATGTAGCTAGTGTCAAACTTGAGCTGGTGTCATGGAAAAGTGTAATTGATGTCACAGGAGATAAGAAGATAATTAAAAAGATTAAGAAAACTGGAGAGGGGTTTGATCGTCCTAATGAAGGATCACAAGTGAAAGTAAGATATTTGAGTAAACTAGAAGATGGAACAATCACCGAGAGGAAAGGAACAGAGGAAGAACCTTTTGAGTTCACAACTCAGGAAGAACAGGTACCCGAGTGGCTAGAAAGAGCAATCATGACAATGAAAAAAGGAGAGCAAGCAATGGTGACCGTCAGTGGCGAATATTTGCCTGATAAAGATAATTTACAAACAACCGCAGCTAATAAAGTCCTCTATTGTGAGGTCGAATTGATTGATTTCATTAAGGAGAAGCCAATTTGGAAAATGGAGACTCAGGAAAAAATAGAAGCTTGTGAGAGGAAGAAGCATGATGGAAATCTACTGTTTAAGGCTGAAAAGTTTATGCGTGCGTCCAAGAAATATGAAAAGGCTGTAAAATGCATTGAGTTTGATCACTCATTCAGTGATGATGAGAGGCGTCATGCTAGTGCCTTACGGTTATCTTGTCATTTGAACAATGCTGCTTGCAAACTTAAATTGGGAGAATATACTGAAGCCGCCGGACTATGTACAAAGGTCCTGGAAGAAGATCCATTGAATGTGAAGGCTCTTTACAGAAGATGCCAAGCATATCTGAAGACATCAGACTTAGAGAAAGCTGAGGCTGACATTAAAAAAGCTCTGATTATTGATCCAAATAATAGAGACATGAGATTTGAGTATAAGGAACTGAAGCTTAAGCAGAAGGAGTACAGTAGATATGAAGCTGGCATCTTCGGCACAATGTTTTCAAGGACGGGCTAG 1173 0.399 MKKIIREGEGWATPRDADEVLVKYEARLESGMLVSESNQGVEFNISDGYLCPAISIAVKTMRKGEEAELTVRLFYGLRQNSNRTSEIVDGCTLQDSNVASVKLELVSWKSVIDVTGDKKIIKKIKKTGEGFDRPNEGSQVKVRYLSKLEDGTITERKGTEEEPFEFTTQEEQVPEWLERAIMTMKKGEQAMVTVSGEYLPDKDNLQTTAANKVLYCEVELIDFIKEKPIWKMETQEKIEACERKKHDGNLLFKAEKFMRASKKYEKAVKCIEFDHSFSDDERRHASALRLSCHLNNAACKLKLGEYTEAAGLCTKVLEEDPLNVKALYRRCQAYLKTSDLEKAEADIKKALIIDPNNRDMRFEYKELKLKQKEYSRYEAGIFGTMFSRTG 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1475 390 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 137 224 IPR001179 GO:0003755
Glsi11g1475 390 SMART tpr_5 241 274 IPR019734 GO:0005515
Glsi11g1475 390 SMART tpr_5 290 323 IPR019734 GO:0005515
Glsi11g1475 390 SMART tpr_5 324 357 IPR019734 GO:0005515
Glsi11g1475 390 SUPERFAMILY FKBP-like 114 243 - -
Glsi11g1475 390 SUPERFAMILY TPR-like 232 379 IPR011990 GO:0005515
Glsi11g1475 390 Gene3D Tetratricopeptide repeat domain 227 383 IPR011990 GO:0005515
Glsi11g1475 390 Pfam Tetratricopeptide repeat 301 358 - -
Glsi11g1475 390 SUPERFAMILY FKBP-like 2 93 - -
Glsi11g1475 390 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 17 109 IPR001179 GO:0003755
Glsi11g1475 390 FunFam Peptidylprolyl isomerase 229 384 - -
Glsi11g1475 390 Gene3D - 1 109 IPR046357 GO:0003755
Glsi11g1475 390 ProSiteProfiles TPR repeat profile. 324 357 IPR019734 GO:0005515
Glsi11g1475 390 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 13 87 IPR001179 GO:0003755
Glsi11g1475 390 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 133 221 IPR001179 GO:0003755
Glsi11g1475 390 PANTHER PEPTIDYLPROLYL ISOMERASE 1 81 - -
Glsi11g1475 390 Gene3D - 110 226 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1475 Glsi-ChrGlsi11 9309088 9311854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1475 2 388 Calmodulin-binding Proteins AT5G48570 52.792 2.33e-135 397