Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1460 ATGACCATGAAGTCTGGGTCACTAGATTACTGGAGGAATTACTTTCGAACTGCAAATTGTGATATATTCGATATAATTGACCATGCAATCATGGTGGCCGTTTCCGATTGTCCTAAGGAGTTTAGATTGCGAAGAGATGGAATTGCAGAACGGTTGTTTACTTGTAGATTGACTCGTTGTTTGGGGTGTGACAGAGTCGAGTTGGCTGTGTCTGGTCATAACGAGGAAGATGGAGGTTGTAAGAGTGACTTTGATCGACATGGTGCTGAATTCGAAGCAGGTGGAAGTAAAGAGAGCAAGGTCAATAGTAGCAGAAACGATCATGGAGAGATGATCAGGAACCAAGTCACTAATTTTAGCTATGGAGAAGCTGAGGCATTGACTAATGAGATGGAAGAAGAGTCTCAAATTGTTGGGGAAGTTTTGAGGATCAGAGAGATTATCTACAACAGCGAAGAAGAGTCTGATTCAGTGTTATTTGAGTCATTGAGGAGGCTACAGCTGATGGCACTGACTGTGGATATTCTCAAGGGAACTGAGATTGGAAAGGCTGTTAATCCTCTTCGAAAGCATGGATCAAGGCAGATTCGTCAACTAGCACGGACTCTTATTGATGGCTGGAAAGAAATGGTAGATGAGTGGGTCAAGGCTACAACAGTTATTGCAGGTTCAGAAAGTACCCCAGATTCAGTAAGTCCATCAGTTGTTTATGAAGAGGAAGGACTTCCATCACCCCCTATGGATGAAGGGGTTTTCTTTGCAGCTCCAACTGATTCAATAGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACAGAGTGGGGAAATCATCAAGAACCGTGAAAGTGGCAGAAAACCATCTCTGGACTGTCAAAACATAGCAAAGAGGAAACCACAGGCTTCCAATGACGCAAACATCATTGCCAAGGAGAGTAAGAGTCAGCAAACAAAGAAAAACGAGGTTGCTGTCAGACTAAATAAACCAGTCATTGCTGATTCTGGCCCTGGCAGACCACCAAAATCGAGCATGCAGCAAAAAAGCAATATGGGGCCGAAGATGCAGCAAAATGTAGATAAGAGTGCTATCCCAAAGAGGCCTCTCGTTGGTCAGCAAGATAAATCCAAGTGTTCGGACGAAGCTGCAGTCCAAGTGAAGCTAGAAGCCACTAAGAGGAAACTTCAGGAGTGTTATCAACAAGCTGAAAATGCCAAGAGGCAGCGAACAATACAGGTTATGGAGTTGCATGATCTCCCAAAGCAAGGGATTGCCCACCGGAATCCACATGCCAAACCCGGAAACAATAACAGGCACTGGGCTCTTGGACGAAGATAG 1347 0.4447 MTMKSGSLDYWRNYFRTANCDIFDIIDHAIMVAVSDCPKEFRLRRDGIAERLFTCRLTRCLGCDRVELAVSGHNEEDGGCKSDFDRHGAEFEAGGSKESKVNSSRNDHGEMIRNQVTNFSYGEAEALTNEMEEESQIVGEVLRIREIIYNSEEESDSVLFESLRRLQLMALTVDILKGTEIGKAVNPLRKHGSRQIRQLARTLIDGWKEMVDEWVKATTVIAGSESTPDSVSPSVVYEEEGLPSPPMDEGVFFAAPTDSIELSQFFDGMDDDGNPRQSGEIIKNRESGRKPSLDCQNIAKRKPQASNDANIIAKESKSQQTKKNEVAVRLNKPVIADSGPGRPPKSSMQQKSNMGPKMQQNVDKSAIPKRPLVGQQDKSKCSDEAAVQVKLEATKRKLQECYQQAENAKRQRTIQVMELHDLPKQGIAHRNPHAKPGNNNRHWALGRR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1460 448 SMART TFS2_5 138 213 IPR003617 GO:0005634
Glsi11g1460 448 MobiDBLite consensus disorder prediction 427 448 - -
Glsi11g1460 448 Coils Coil 388 411 - -
Glsi11g1460 448 CDD TFIIS_I 140 212 - -
Glsi11g1460 448 Pfam TFIIS helical bundle-like domain 163 211 IPR017923 -
Glsi11g1460 448 MobiDBLite consensus disorder prediction 299 317 - -
Glsi11g1460 448 MobiDBLite consensus disorder prediction 266 362 - -
Glsi11g1460 448 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 221 IPR035441 -
Glsi11g1460 448 MobiDBLite consensus disorder prediction 273 290 - -
Glsi11g1460 448 ProSiteProfiles TFIIS N-terminal domain profile. 139 214 IPR017923 -
Glsi11g1460 448 MobiDBLite consensus disorder prediction 343 360 - -
Glsi11g1460 448 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 221 IPR035441 -
Glsi11g1460 448 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 436 IPR044805 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1460 Glsi-ChrGlsi11 9211751 9214613 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Glsi11g1460 Med26 1e-11 No_clan