Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1459 ATGGAAGAAGATGGTGAATTTATCGACGCAATAGACCAATATTCTCAAGGTTCACAGTCTCTATCGTCTTCGTCCGAAACTTACCTGCTTGGCTTTGTCTTTGCCAACATTGTTGGGATTAAACACTATTCCGGCACCATCAGTGGCCGTGAAATGGTGGGTCTGGTCCGTGAACCTCTCAATCCCTACGACGAGAACGCCATTAAAGTCCTCAACACTCGAACCGTTCAGGTTGGACATATTGAGCGCTCCGTCGCAGCCGTACTGTCTCCTTTGATAGACGCCAACCTAATTGCCGTGGAAGGCATTGTCCCCAATACGCGAGCTGCTGGTAACCGATTCAAACTTCCTTGTCAACTTCACATCTTTGCGGCGATTGAAGCTTTTCCAACCGTGAAAGATGTGATTTTTGAAGGCGGGTTGCAGTTAATTTTAGATTGTAGTGCATCGTTTACGTTGTCAGAGGCTGTGGCTGTGAAAGAGAGGAGGGCTAAGAAAGAAGTTAAGAGTGTAGATGATATTTTTAAGTTGGTCGATGAGAATGTCAGCAAAAGGTGTGCATTGGAAGCGTTGGACCCCCCTAGAAGTGTCATTAAGTCTGATCTTTTGTTACATCAAAAGGAAGGGTTGGGCTGGTTAGTTCTTAGGGAGAATTCTGGTGAATTGCCGCCTTTTTGGGAAGAGAAAGATGGAGCTTATGTGAATGTTTTGACTAATTATCACACGGACATAAGGCCGGAGCCTTTGCGAGGTGGTATTTTAGCAGATGATATGGGATTAGGCAAGACTTTAACTTTACTTTCTTTAATTGCTTTTGATAAAGACTCTAATGCTCGAAATATCGTTGAAAGGAAGCATGATGAAATAGGGGAGCAGGATGAAGGATTCTCTCTCTCAAGTGGTAAGAAGGACAAGAGAAGAAGAACAAATAAACAGGCAACTGGGTCACAAAAAAGACGCAAGACAGAGAGTACTCCTTCAGGGGGGCTGGTTAATACAAAATCTGTTGTTCTAGATGACATCGCGTCAACTGGCATTGATATAAAGACAACATTGGTTGTATGCCCCCCTTCCGTATTTTCATCATGGATAACACAGCTAGAAGAACATACTAAATCGGGCGCATTGAAGACATACATGTATTATGGTGATAGAAGGACCAAGGATGCTAAGGAGCTCAAGATGTATGATTTAGTGTTAACTACATATACCACCTTAGCTAGTGAAGAATCTTGGTCAAACTCACCAGTAAAGAAAGTAGAGTGGTGGAGAGTCATTTTGGATGAAGCACATGTAATCAAGAATGCCAATGCTCAACAAAGTCGGGCTGTCATGAATCTGATTTCTAAGCGGAGGTGGGCTGTTACAGGGACACCGATTCAAAATGGTTCATATGATTTATTTTCTCTCATGGCTTTTTTACAGTTTGAACCATTTTCAATAAAGAGCTATTGGCAGAGCTTGGTGCAACGTCCTCTTGCTCAAAGCAACATAAGCGGACTCACACGTTTGCAGGCTTTGATGGCAACAATTTCGTTGAGAAGAACGAAAGACAAAGCATTGGTAGGATTGCCTCCAAAAACCATAGAGACTTGTTATGTTGAACTTTCTAGGGAAGAACGCGAACTGTATGATCGGATGGAAGGGGAAGCAAAGAATATAGTGCAGGGTTATATAAATGATGGAAGTCTAATGCGCAACTATACCACTGTACTTAGTATAATTTTACGACTTCGCCAAATTTGTACTGATTTGGCATTGTGCCCTTCAGATCTCAAATCTCTACTCCCTTCAAAAAACATTGAAGATGTTTCCAATAACCCGGAGTTGCTGAGAAAGTTGGTTGAGGTGCTGCAAGATGGCGAGGATTTTGACTGTCCAATATGTATTTCTCCACCAACTGATATTGTAATTACATGCTGTGCTCACATTTTCTGCCAAGCTTGTATTCTGAAAACTATGCAGCGCAGCAAATCCTGTTGTCCCCTTTGTCGTAGGCCCCTTTCAGAATCTGACTTGTTCTCAGCCCCTCCTAAATCTTGTGAGGCTGATAGTACTGGACTATCCTCATCAGGAGCAAGCTTATCTTCTAAAGTGTCTGCTCTGATAAAACTTCTTGTAGACTCAAGGGATCACCGTCCAGATACAAAATCAGTTGTGTTTTCACAATTTCGTAAGATGTTGATGTTACTAGAAGAGCCTCTGAAAGCAGCTGGTTTCAAGATTTTGCGTCTTGACGGGTCAATGAATGCAAAACGGAGGGCTCAAGTTATTGAGGAATTTGGAGTCCCAGGAAGAGATGGGCCCATGGTTCTGCTTGCGAGCCTGAAGGCTTCAGGTGCAGGTATAAATCTTACAGCAGCCTCCAGAGTATACTTGTTGGAGCCATGGTGGAACCCAGCAGTTGAGGAACAGGCAATGGATCGTGTCCACCGCATCGGACAGAAAGAGGACGTGAAAATTGTTAGATTAATTGCTCAAAACAGCATTGAAGAGAGGATATTGGAGTTGCAGGAGAAGAAGAAGCAACTTGCAAGGGAAGCATTTGGAAGGAAGGGGCCAAAGGGTCGCAGGGAGGTTGGCACGGATGATCTGCGTGTTCTTATGTCCTTAGTGGCAGCTTTGGATGACCCAAAGAAGTTCAAGCTCCGCAGAAAGCAGATTGTTGAGAAACTCTACTCCTGCCAATTCACTGGGTGTTTCTGTGCTGATAAAACAGAGCTTGATGTTGAAAGGACCATTACTGAAACTGCCAAGGACTGCAAAAAAAGAGGGACTGAGGTTGGGGAACATGGACAGATAATTAGTTTGAATGAAATCAGCAAGTTCAGCATCAGTGAAACCCAGGCATTAGGAGATAAGATTGAGGATGATTTTGAGAATATTCGTAATGTTTTAGAGATTAAGGAGCAGCTTGAGAACACTGAAGAGCAGACGGAGACAGAGATTTATGAGTCATTGAGAAGGCTGCAATTGATGGTTGTCTCCGTTGATGTTCTGGAGGTTACAAAGATAGGAAGCACAATACGTGATCTTCAGCATCACTGGTCCAGGCAGATTGCTCAGTTGGCAAGGAGTATTGCTGATGACTGGAAGACAATGATAGAGGAGTGGGTTGATGCAGCAGCAGAAACTGCAGAACGGTCTAAAAACCCTGAACCCGACACCGTTCTTGAAGAGTGGCGAGGGTTGCCCCCTCCTTCAATGGATGAAATTCTCTTAGTTTCTCAATCTCCAATGGAGTTTTCCGAGAAGAAGTTTTTTGATGGCATGGATGATGACGATCAAAGTCCTGACAATGGCAATGGAATTGAAGAGATTCATGAAAACAAGACAGAACTGAAGTTGCAACTTGGCGAGGGAGCAGCATGCAGGCGCCAAAAAGCAAAGCAAGAATCCATTGAGAAATTAGTTAATTCAATGACAAATTTTCCAAGAGGAAACAAAAGAGAACTGGAGTTGCAACTTATAGAGGACGCAGAACATGTCAGCATGATCAAGCGCCAAAAAGCAAGGCGTCCAAACACTGAATGCACTTCAGAGATATATCGAAAACCAAGAGTGAAGAAAGAGGTTGAAAATGACATGGACATTGGTAACAAGAAGGACAAGCAGCAGCGAGCTCTTCAAAGCCCAAATGCAGTACTAAAGCATCCAAGTAGGTCATCTGATGATACTGCAATGGTAGATAAACTTCAAACCTCCAAGAAAAAACTCCGGGCGGGATACCAAGCTCATGAAAAGGCTAGGAGGAACATCCAGTTAATTACGGAATTGCGTGATGTCCCCAAACATGCATCGCGGCGCAGAAGCTCACGCTCCAATTTCAGGATCCAAACTCGGAGACGCTAA 3852 0.4354 MEEDGEFIDAIDQYSQGSQSLSSSSETYLLGFVFANIVGIKHYSGTISGREMVGLVREPLNPYDENAIKVLNTRTVQVGHIERSVAAVLSPLIDANLIAVEGIVPNTRAAGNRFKLPCQLHIFAAIEAFPTVKDVIFEGGLQLILDCSASFTLSEAVAVKERRAKKEVKSVDDIFKLVDENVSKRCALEALDPPRSVIKSDLLLHQKEGLGWLVLRENSGELPPFWEEKDGAYVNVLTNYHTDIRPEPLRGGILADDMGLGKTLTLLSLIAFDKDSNARNIVERKHDEIGEQDEGFSLSSGKKDKRRRTNKQATGSQKRRKTESTPSGGLVNTKSVVLDDIASTGIDIKTTLVVCPPSVFSSWITQLEEHTKSGALKTYMYYGDRRTKDAKELKMYDLVLTTYTTLASEESWSNSPVKKVEWWRVILDEAHVIKNANAQQSRAVMNLISKRRWAVTGTPIQNGSYDLFSLMAFLQFEPFSIKSYWQSLVQRPLAQSNISGLTRLQALMATISLRRTKDKALVGLPPKTIETCYVELSREERELYDRMEGEAKNIVQGYINDGSLMRNYTTVLSIILRLRQICTDLALCPSDLKSLLPSKNIEDVSNNPELLRKLVEVLQDGEDFDCPICISPPTDIVITCCAHIFCQACILKTMQRSKSCCPLCRRPLSESDLFSAPPKSCEADSTGLSSSGASLSSKVSALIKLLVDSRDHRPDTKSVVFSQFRKMLMLLEEPLKAAGFKILRLDGSMNAKRRAQVIEEFGVPGRDGPMVLLASLKASGAGINLTAASRVYLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIAQNSIEERILELQEKKKQLAREAFGRKGPKGRREVGTDDLRVLMSLVAALDDPKKFKLRRKQIVEKLYSCQFTGCFCADKTELDVERTITETAKDCKKRGTEVGEHGQIISLNEISKFSISETQALGDKIEDDFENIRNVLEIKEQLENTEEQTETEIYESLRRLQLMVVSVDVLEVTKIGSTIRDLQHHWSRQIAQLARSIADDWKTMIEEWVDAAAETAERSKNPEPDTVLEEWRGLPPPSMDEILLVSQSPMEFSEKKFFDGMDDDDQSPDNGNGIEEIHENKTELKLQLGEGAACRRQKAKQESIEKLVNSMTNFPRGNKRELELQLIEDAEHVSMIKRQKARRPNTECTSEIYRKPRVKKEVENDMDIGNKKDKQQRALQSPNAVLKHPSRSSDDTAMVDKLQTSKKKLRAGYQAHEKARRNIQLITELRDVPKHASRRRSSRSNFRIQTRRR 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1459 1283 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 956 1051 IPR035441 -
Glsi11g1459 1283 MobiDBLite consensus disorder prediction 292 329 - -
Glsi11g1459 1283 SMART helicmild6 729 814 IPR001650 -
Glsi11g1459 1283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 691 IPR013083 -
Glsi11g1459 1283 SMART ring_2 626 664 IPR001841 -
Glsi11g1459 1283 SMART HIRAN_2 30 126 IPR014905 GO:0003676|GO:0008270|GO:0016818
Glsi11g1459 1283 ProSiteProfiles Zinc finger RING-type profile. 626 665 IPR001841 -
Glsi11g1459 1283 Pfam Zinc finger, C3HC4 type (RING finger) 623 669 - -
Glsi11g1459 1283 Coils Coil 827 847 - -
Glsi11g1459 1283 MobiDBLite consensus disorder prediction 1167 1246 - -
Glsi11g1459 1283 Pfam TFIIS helical bundle-like domain 987 1035 IPR017923 -
Glsi11g1459 1283 Gene3D - 22 143 - -
Glsi11g1459 1283 MobiDBLite consensus disorder prediction 1230 1246 - -
Glsi11g1459 1283 Pfam SNF2-related domain 205 585 IPR000330 GO:0005524|GO:0140658
Glsi11g1459 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 516 864 IPR027417 -
Glsi11g1459 1283 SMART ultradead3 198 484 IPR014001 -
Glsi11g1459 1283 SMART TFS2_5 965 1037 IPR003617 GO:0005634
Glsi11g1459 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 515 IPR027417 -
Glsi11g1459 1283 CDD SF2_C_SNF 698 825 - -
Glsi11g1459 1283 MobiDBLite consensus disorder prediction 1258 1283 - -
Glsi11g1459 1283 MobiDBLite consensus disorder prediction 1205 1220 - -
Glsi11g1459 1283 SUPERFAMILY RING/U-box 611 671 - -
Glsi11g1459 1283 Gene3D - 525 891 IPR027417 -
Glsi11g1459 1283 Coils Coil 962 982 - -
Glsi11g1459 1283 ProSitePatterns Zinc finger RING-type signature. 641 650 IPR017907 -
Glsi11g1459 1283 CDD RING-HC_HLTF 621 673 - -
Glsi11g1459 1283 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 243 477 IPR014001 -
Glsi11g1459 1283 ProSiteProfiles TFIIS N-terminal domain profile. 960 1038 IPR017923 -
Glsi11g1459 1283 Gene3D - 331 516 IPR038718 -
Glsi11g1459 1283 Pfam Helicase conserved C-terminal domain 698 814 IPR001650 -
Glsi11g1459 1283 Gene3D - 179 286 IPR038718 -
Glsi11g1459 1283 MobiDBLite consensus disorder prediction 1167 1204 - -
Glsi11g1459 1283 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 161 869 - -
Glsi11g1459 1283 MobiDBLite consensus disorder prediction 1266 1283 - -
Glsi11g1459 1283 Pfam HIRAN domain 30 124 IPR014905 GO:0003676|GO:0008270|GO:0016818
Glsi11g1459 1283 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 960 1050 IPR035441 -
Glsi11g1459 1283 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 698 861 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1459 Glsi-ChrGlsi11 9194179 9203969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1459 1 871 RAD5 or RAD16-like Gene Family AT5G05130 64.679 0.0 1142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi11g1459 SNF2_N 1.6e-74 CL0023