Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1440 ATGGGTAGTAGAACGGTAAACATTAACACCCAGGACGGTAGCAAGGTTGTGAACGGGATGCCGAGCTACGCTCCGCCATTGTCTACTTCTAGTTCCATGGCCATAGAAGGAACGACTGTTCATCATTCTCAAATTTCTGATTTTGGAGCCCTTGAGCAATCTCTTGGATTTCGCCTAGAGGATACTATCAATCTTAGCAGAAATCCAATGCTCAGTCAAATAAAGTCAAATAGCCAAGCTCTAGGTGCTGATGTTCATTTTGGTTCTCTAAGTAAGTCGGTAGCAACCTCAGATATAAACCTCTCTGCTGCAATTGTGGGATCTCAGACATTGCCATTACAAAGAGACTCCCGATCAAATATGGCTTCTACATCTGCTGGCCATCGTGAGAACTGGGGGGAGTCCAATATTGCAGATGCAAGCCCGAGGACTGATACTTCAACAGATGATACAGAGGATAAAAATCATAGGCCTGAAAGGGGTCAATCAGGCATTGCTGTCTCTGATTCCAGTGATAGATCAAAAGATAAATCAGATCAAAAGACGTTACGACGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGACTAAGGAAAAAGGCATATGTACAACAACTTGAGAGTAGCAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGTGCCCGCCAGCAGGGCATTTTCATTTCAAGCACAGGAGATCAGTCCCATTCAATGAGTGCAAATGGTGCTATGGCATTTGATGTAGAATATGCACGATGGTTAGAAGATCATAATAGGCAAATCAATGAGCTAAGGGCTGCAGTCAATTCTCATGCTGGAGATATTGAACTTCGCACAATTGTTGACAATGTCATGACACACTTTGATGAGATTTTCAGGCTGAAAGGTGTTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCTGGAATGTGGAAGACTCCAGCTGAGAGATGTTTCATGTGGATTGGAGGATTCCGCTCATCTGAGCTTCTCAAGCTTCTGGTAACTCAATTGGAGCCTTTAACCGAGCAACAACTGATGGGCATCTACAACTTGCAGCAGTCTTCCCAGCAGGCTGAAGATGCTCTGTCCCAAGGAATGGATGCATTGCAGCAATCACTAGCCGAGACGCTGGCTAATGGTTCACCCAGCCAAACAGGCTCATCTGGAAACGTGGCAAATTATATGGGCCAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGAGGGCTTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACATTACAACAAATGCTGCGGATATTAACAACCAGGCAATCAGCTCGCGCTCTTCTTGCAATTGGTGATTATTTCTCCCGGCTACGAGCCCTAAGTTCTCTGTGGCTTGCCCGACCTAGGGAATGA 1401 0.4604 MGSRTVNINTQDGSKVVNGMPSYAPPLSTSSSMAIEGTTVHHSQISDFGALEQSLGFRLEDTINLSRNPMLSQIKSNSQALGADVHFGSLSKSVATSDINLSAAIVGSQTLPLQRDSRSNMASTSAGHRENWGESNIADASPRTDTSTDDTEDKNHRPERGQSGIAVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQSHSMSANGAMAFDVEYARWLEDHNRQINELRAAVNSHAGDIELRTIVDNVMTHFDEIFRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVTQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSQTGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAIGDYFSRLRALSSLWLARPRE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1440 466 SMART brlzneu 177 240 IPR004827 GO:0003700|GO:0006355
Glsi11g1440 466 FunFam BZIP family transcription factor 180 229 - -
Glsi11g1440 466 Pfam Basic region leucine zipper 177 223 IPR004827 GO:0003700|GO:0006355
Glsi11g1440 466 MobiDBLite consensus disorder prediction 170 184 - -
Glsi11g1440 466 MobiDBLite consensus disorder prediction 112 144 - -
Glsi11g1440 466 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Glsi11g1440 466 MobiDBLite consensus disorder prediction 112 184 - -
Glsi11g1440 466 ProSiteProfiles DOG1 domain profile. 246 463 IPR025422 GO:0006351|GO:0043565
Glsi11g1440 466 CDD bZIP_HBP1b-like 181 233 - -
Glsi11g1440 466 Gene3D - 180 232 - -
Glsi11g1440 466 PANTHER TRANSCRIPTION FACTOR TGA9 121 466 - -
Glsi11g1440 466 Pfam Seed dormancy control 263 338 IPR025422 GO:0006351|GO:0043565
Glsi11g1440 466 Coils Coil 257 277 - -
Glsi11g1440 466 Coils Coil 200 227 - -
Glsi11g1440 466 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Glsi11g1440 466 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Glsi11g1440 466 MobiDBLite consensus disorder prediction 145 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1440 Glsi-ChrGlsi11 9079786 9084810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1440 137 466 bZIP Transcription Factor Family AT3G12250 76.133 5.12e-180 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi11g1440 DOG1 3.8e-32 No_clan