Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1431 ATGTCATCACGAGGTCGGAAATCCAAACTTATTTATGGGATTAATTATCCCTTCAAACCACGGGGCAAAATAAATTCTCAAGATCATATTTGCCAGCAGTATGAGGCCCTCTTACACATCCATTCTAGCTTTTGTATAGGCATTTGCAAGGAAAACTACATAAAATGCACTGAATTCAGATCTGGTTTTTTCTATGATGGTGAAAGTAAATTTTCGGTTAGTATGCCTGGTTCTCTCATTTCTCGTTTGATCAATGAAATATTATGTAATCTGTTAAAGATGAAATGCAAAGATCCAGAATCTCGCCACTATATATCAGAGGTCCTAGACTCTCAGCTTCTAACTAATCCCATCATGTTAGAATTATCGCCTCCTCTGTTGTTCTCACCCACTGAATGGCCCTTGGATGAGTTTTGTTCACCTCAGCCACAGCAGGTTGAGCTTCAAAGGGTTACACCATCCTCAGCGATAAGCAGCGACCCTACCATGCTTAAGAAGCTTAACCATAATGCTAGTGAACGTCATCGTCGCAAGAAGATCAATAGCTTGTATTCCTCACTTAGTTCTATGCTTCCTGTGGCAGATCAAATGAAAAAATTAAGCATTCCAGCAACAATTTCGCGAGTCTTAAAGTACATTCCGGAGTTACGGCGGCAAGTGGAAGGACTTATTAAAAAAAAGGAGGAGCTTTTATTAAGAATATCTCGGCAAGGAGATACAGTAAGCAAGGAATCTGGAAGGAAAATTGCCCATCACAACCCTGTTTGTGTGGTTTCAACGACTAGGCTCAATGATATCGAGGCTGCTATTCAGATTTCCTCTGACAAGGTCCATAAAACTCCACTATCTGAGATCTTGCTGTGTTTAGAAAAAGATGGTCTTTTACTGCTAAATGCTTCTTGCAGCGAGACCTTTGACGGGAGGGTTTTCTATGACTTGCATTTGCAGGTGGAAAAAACTTGTAGATTAGATTGCAACATTATAAGCGAGAGGCTTTTGTCAATATATGAGAACAAGGAAGGGATTTTTCAATGTCTCTGA 1041 0.4006 MSSRGRKSKLIYGINYPFKPRGKINSQDHICQQYEALLHIHSSFCIGICKENYIKCTEFRSGFFYDGESKFSVSMPGSLISRLINEILCNLLKMKCKDPESRHYISEVLDSQLLTNPIMLELSPPLLFSPTEWPLDEFCSPQPQQVELQRVTPSSAISSDPTMLKKLNHNASERHRRKKINSLYSSLSSMLPVADQMKKLSIPATISRVLKYIPELRRQVEGLIKKKEELLLRISRQGDTVSKESGRKIAHHNPVCVVSTTRLNDIEAAIQISSDKVHKTPLSEILLCLEKDGLLLLNASCSETFDGRVFYDLHLQVEKTCRLDCNIISERLLSIYENKEGIFQCL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1431 346 FunFam Transcription factor ORG2 160 245 - -
Glsi11g1431 346 Pfam Helix-loop-helix DNA-binding domain 165 216 IPR011598 GO:0046983
Glsi11g1431 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 216 IPR011598 GO:0046983
Glsi11g1431 346 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 161 334 - -
Glsi11g1431 346 SMART finulus 170 222 IPR011598 GO:0046983
Glsi11g1431 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 234 IPR036638 GO:0046983
Glsi11g1431 346 Gene3D - 158 244 IPR036638 GO:0046983
Glsi11g1431 346 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1431 Glsi-ChrGlsi11 8992126 8995408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1431 99 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.169 1.05e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g1431 HLH 4.3e-10 No_clan