Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1418 ATGGTAGAGAAGGCGTCAATCGAAGATGTAATGAAGGTACTTGTGGCTTCAAGAAAGCAAGACATGCACCAGCTATGGAGCACTTGTTCCCACCTCGTTGCAAAGTCTGGTCTCCCCCCCGAAGTCCTCGCCAAACACCTCCCCATTGAAGTTGTGGCTAAGATCGAAGAGATTCGTCTCAAATCCTCCCTCTCTCGTCGTTCCCTTATGCCCTACCACCAGCACCAGCACCACCTCAGCGCCGCCGCTGACCTCGAGGACCAGAAAATTCGTCGAATGAAAAGGGCACTTGACTCCTCCGATGTGGAACTTGTGAAGCTCATGGTGATGGGGGAAGGTCTAAATCTAGATGAAGCCTTGGCCTTACACTATGCAGTAGAGAATTGTAGCCGTGAGGTTGTGAAGGCGCTGCTTGAACTGGGTGCGGCTGATGCTAACTACCCTGCCGGTCCCGCCGGCAAAACACCGCTTCACATTGCCGCTGAGATGGTGTCGCCGGACATGGTAGCGGTCCTTCTGGACCACCATGCTGACCCAAATGTCCGAACCTTGGATGGCGTCACCCCTCTGGACATCCTGAGAACCCTAACTTCTGATTTCCTGTTCAAAGGGGCTGTGCCTGGTTTAACACATATGGAACCCAACAAGCTAAGGTTGTGCTTAGAGCTAGTTCAATCAGCAGCACTTGTGCTCTCGCGCGAAGAAGGCAATGCCAATCCTCCTACTTCAACACCCATATATCCCCCGATGAGCGAAGACCATAGCAGCGGCAGCAGCAACAACAACAACAACAGCAACAACATTGCCAACCTCAACCTCGACTCAAGGTTGGTTTATCTCAATCTGGGTGCCACCGCTCAGCTAGCTTCCAGATTGGATGGAGACGACGACGGCACCCACAATAGCCACAGGGAGGCCATGAACATCAGTCGCCATGGCTCGCAAGGTCGAAGTGACCCAACAATCTACCAACTCTCTCATGATTTCTAG 990 0.5263 MVEKASIEDVMKVLVASRKQDMHQLWSTCSHLVAKSGLPPEVLAKHLPIEVVAKIEEIRLKSSLSRRSLMPYHQHQHHLSAAADLEDQKIRRMKRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADANYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTLDGVTPLDILRTLTSDFLFKGAVPGLTHMEPNKLRLCLELVQSAALVLSREEGNANPPTSTPIYPPMSEDHSSGSSNNNNNSNNIANLNLDSRLVYLNLGATAQLASRLDGDDDGTHNSHREAMNISRHGSQGRSDPTIYQLSHDF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1418 329 Gene3D - 73 200 IPR036770 -
Glsi11g1418 329 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 320 IPR044284 GO:0099402
Glsi11g1418 329 SUPERFAMILY Ankyrin repeat 111 195 IPR036770 -
Glsi11g1418 329 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Glsi11g1418 329 SMART ANK_2a 117 147 IPR002110 GO:0005515
Glsi11g1418 329 SMART ANK_2a 152 181 IPR002110 GO:0005515
Glsi11g1418 329 Pfam Domain of unknown function (DUF3420) 37 93 IPR024228 -
Glsi11g1418 329 MobiDBLite consensus disorder prediction 308 329 - -
Glsi11g1418 329 MobiDBLite consensus disorder prediction 293 307 - -
Glsi11g1418 329 FunFam regulatory protein NPR5 isoform X2 83 200 - -
Glsi11g1418 329 MobiDBLite consensus disorder prediction 248 267 - -
Glsi11g1418 329 MobiDBLite consensus disorder prediction 291 329 - -
Glsi11g1418 329 Pfam Ankyrin repeats (3 copies) 100 182 IPR002110 GO:0005515
Glsi11g1418 329 ProSiteProfiles Ankyrin repeat region circular profile. 152 182 - -
Glsi11g1418 329 MobiDBLite consensus disorder prediction 234 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1418 Glsi-ChrGlsi11 8892151 8893140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1418 153 190 Ion Channels AT2G26650 52.632 9.97e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2245 02 72925310 72927634 Glsi11g1418 11 8892151 8893140 CCT
Glsi11g1418 11 8892151 8893140 Glsi11g1418 11 8892151 8893140 ECH