Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1389 ATGGAAGTCGAGGAGGAAAAATCTTCTACTACTTCTGCAGAAACATCTATTTCAGCCTCTGATGGTCAAAGCCCGATTTCTCCTGTAAATGCAACTCTGCCTCCGCCAATACAACCTATAATTCCAGCAGTAGTTCCCCCTTCTGTTGTGCCTCCTATAGCTCCTATTCCTACTCCCCCTGTTGTCCGGCCATTGGCATCACTTCCTGTTCGGCCACCATCTAGTAGGCCATCTGTGTCGCAAAATGGTGAGGTTGGATCAACTGATTCTGATTCAGATCGTGATGACTCAGGCCCTGGGATTAACAAAGGTACAGGGGAGTATCAGATATCAGAAGAGAGTAGACTGGTAAGAGAGCGGCAGGAAAAAGCAATGCAGGAACTCATGATGAAGAGGCGTGCTGCCGCTCTAACTGTTCCTACAAACGACATGGCTGTTCGAGCTCGTCTTCGCCGTCTTGGAGAGCCCATAACCCTTTTTGGTGAAAGGGAGATGGAGAGAAGAGATAGGTTGCGAATGATTTTGGCAAAGTTGGATGCGGAAGGTCAGTTGGAGAAGTTGATGAAGGCTCATGAGGATGAAGAGGCTGCAGCTTCTGCTGCAAAAGATGAATCTGAGGAAGAACTACAGTATCCCTTTTACACTGAGGGGTCAAAGGCCCTTTTGGATGCCAGAATAGATATTGCTAAGTATTCTTTAGTAAGAGCAGCAACACGTCTTGAACGTGCCCGGAGAAGAAGAGATAATCCAGACGAAGATATGGATGCAGAAATGGATTGGGCATTGAAGCAGGCAGAGAACTTGGTTCTTGATTGCAGTGAGATTGGAGATGATCGGCCGCTTTCTGGTTGCTCCTTCTCAACAGATGGAAAATGGCTTGCTACCTGTTCTCTAACTGGAGCTGCAAAGTTGTGGAGCATGCCTGAAGTTAAAAAAATTTCTACGTTAAAGGGGCACACAGAGCGTGCTACCGATGTTGCATATTCTCCTGTGCATAATCATATAGCAACTGCCTCTGCTGATCGGACTGCAAAATATTGGAACGATCAGGGATCTCTCTTGAACACATTTGAGGGTCATCTTGACCGTCTTGCTCGCATTTCCTTCCATCCATCAGGAAAGTACCTGGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACATTGAAACTGGAGAGGAGTTGCTTCTCCAAGAAGGTCACAGTAGGAGTGTATATGGTTTAGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTGGATGCACTGGCTCGTGTTTGGGACCTTCGTACTGGGAGAAGTATTCTTGCACTAGAAGGTCATGTCAAGCCAGTTCTTGGCATCAGTTTTTCACCCAATGGGTATCATTTAGCCACTGGTGGCGAAGATAACACTTGTCGCATTTGGGATTTGAGAAAGAAGAAATCCTTGTACACCATTCCTGCTCATGCTAATTTAGTATCACAAGTCAAATTTGAGCCCCAAGAGGGATACTTTTTGGTAACTGCCTCATATGATATGACAGCTAAGGTTTGGTCAGCCCGTGATTTTAAGCCTGTGAAGACATTATCTGGGCATGAAGCAAAGGTTACATCTCTGGATGTCCTCGGAGATGGAGGGTATATTGCTACTGTCTCCCATGATCGGACCATTAAGCTGTGGTCCAGCAACATGGCTAGTGAACAAGCTATGGATGTTGACTAA 1713 0.4612 MEVEEEKSSTTSAETSISASDGQSPISPVNATLPPPIQPIIPAVVPPSVVPPIAPIPTPPVVRPLASLPVRPPSSRPSVSQNGEVGSTDSDSDRDDSGPGINKGTGEYQISEESRLVRERQEKAMQELMMKRRAAALTVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMILAKLDAEGQLEKLMKAHEDEEAAASAAKDESEEELQYPFYTEGSKALLDARIDIAKYSLVRAATRLERARRRRDNPDEDMDAEMDWALKQAENLVLDCSEIGDDRPLSGCSFSTDGKWLATCSLTGAAKLWSMPEVKKISTLKGHTERATDVAYSPVHNHIATASADRTAKYWNDQGSLLNTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHANLVSQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDVLGDGGYIATVSHDRTIKLWSSNMASEQAMDVD 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1389 570 Gene3D - 117 186 IPR036285 -
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 483 525 IPR001680 GO:0005515
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 348 IPR001680 GO:0005515
Glsi11g1389 570 ProSitePatterns Trp-Asp (WD) repeats signature. 418 432 IPR019775 -
Glsi11g1389 570 MobiDBLite consensus disorder prediction 73 87 - -
Glsi11g1389 570 CDD WD40 280 558 - -
Glsi11g1389 570 Gene3D - 443 568 IPR015943 GO:0005515
Glsi11g1389 570 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 256 440 - -
Glsi11g1389 570 Coils Coil 177 208 - -
Glsi11g1389 570 PRINTS G protein beta WD-40 repeat signature 460 474 IPR020472 -
Glsi11g1389 570 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Glsi11g1389 570 PRINTS G protein beta WD-40 repeat signature 545 559 IPR020472 -
Glsi11g1389 570 SUPERFAMILY PRP4-like 124 179 IPR036285 -
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 526 558 - -
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 441 482 IPR001680 GO:0005515
Glsi11g1389 570 SMART WD40_4 309 348 IPR001680 GO:0005515
Glsi11g1389 570 SMART WD40_4 265 306 IPR001680 GO:0005515
Glsi11g1389 570 SMART WD40_4 350 389 IPR001680 GO:0005515
Glsi11g1389 570 SMART WD40_4 519 558 IPR001680 GO:0005515
Glsi11g1389 570 SMART WD40_4 476 516 IPR001680 GO:0005515
Glsi11g1389 570 SMART WD40_4 434 473 IPR001680 GO:0005515
Glsi11g1389 570 SMART WD40_4 392 431 IPR001680 GO:0005515
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 398 IPR001680 GO:0005515
Glsi11g1389 570 ProSitePatterns Trp-Asp (WD) repeats signature. 460 474 IPR019775 -
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 483 516 - -
Glsi11g1389 570 Gene3D - 258 442 IPR015943 GO:0005515
Glsi11g1389 570 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 484 560 - -
Glsi11g1389 570 Pfam WD domain, G-beta repeat 352 389 IPR001680 GO:0005515
Glsi11g1389 570 Pfam WD domain, G-beta repeat 312 348 IPR001680 GO:0005515
Glsi11g1389 570 Pfam WD domain, G-beta repeat 479 516 IPR001680 GO:0005515
Glsi11g1389 570 Pfam WD domain, G-beta repeat 521 558 IPR001680 GO:0005515
Glsi11g1389 570 Pfam WD domain, G-beta repeat 439 473 IPR001680 GO:0005515
Glsi11g1389 570 Pfam WD domain, G-beta repeat 400 431 IPR001680 GO:0005515
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 348 - -
Glsi11g1389 570 SUPERFAMILY WD40 repeat-like 273 557 IPR036322 GO:0005515
Glsi11g1389 570 Pfam pre-mRNA processing factor 4 (PRP4) like 146 172 IPR014906 -
Glsi11g1389 570 PANTHER WD40 REPEAT PROTEIN 91 559 - -
Glsi11g1389 570 ProSitePatterns Trp-Asp (WD) repeats signature. 376 390 IPR019775 -
Glsi11g1389 570 SMART pr04_2 141 194 IPR014906 -
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 436 - -
Glsi11g1389 570 MobiDBLite consensus disorder prediction 29 71 - -
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 558 IPR001680 GO:0005515
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 440 IPR001680 GO:0005515
Glsi11g1389 570 MobiDBLite consensus disorder prediction 10 28 - -
Glsi11g1389 570 MobiDBLite consensus disorder prediction 1 114 - -
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 394 - -
Glsi11g1389 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 441 475 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1389 361 557 U-box Gene Family AT2G33340 23.529 4.82e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1389 11 8737369 8740669 Glsi11g1389 11 8737369 8740669 ECH