Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1374 ATGGGCAGCCATTATTCCTGGTCTCTGATAAGCTTTTTTGCGAAAAGTCTGTGCAGTGAACAGAAAGAAATCCAAGGAAGGTGTCGCTCTCTGATTTTGGAGGCAATGGAGAGTTTATTGAAGGACTTCGAACTAGAGTCCAAGAATCCATCCACGGAAGCGATGAGGAGATGGAGATCCGCCGTCTGGTTGGTCAAGAACCACCGGAGAAGGTTTCGCATGGTTGCGGATCTCGATAAACGTTCCGAAGCGGAGAAGATTAAGAAGAAAATCCAGGCAAAGATTCGGATTGCTCTCTATGTTCAAAAGGCAGCATTGCAGTTTGTTGATGGTGTTCGAGTTGATTCCAGTCTATCAGACGAGACGAGAAAAGCTGGTTTTGGTATTAATCCAGATGACATTGCCTCTATTGTTCGCGGCCATGATTATAAGAAATTGAGAATAATTGGAGGAGTTGAAGGGATTGCGACGAAATTATCTGTCTTAGTGGATGAAGGTGTCAGTGGAAACAGTATAAATACCAGGCAACAAATTTATGGGTCCAACCGTTACACAGAGAAACCTTCCAGAACCTTCCTGATGTTTGTGTGGGAAGCGCTGCATGACTTAACGCTAATCATTCTCATGATTTGTGCTCTAGTTTCTATAGGTGTAGGGATTGCCACTGAAGGGTGGCCGAAGGGCGTGTATGATGGTCTGGGAATCATACTCAGTATATTCTTGGTAGTTATTGTTACTGCTGTCAGTGACTACCAGCAATCGTTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAAATCATTGTTCAGGTCACCAGGGACGGGAAGAGGCAGAAGATCTCAATTTATGATCTGGTAGTGGGAGATATTGTCCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGGTTTTCATATGGGGATACAGTTTGTTGATCGACGAATCAAGTTTGTCAGGTGAGAGCGAACCAGTAAACGTAAATGAAGAAAAACCTTTCCTACTTTCAGGAACCAAAGTGCAAGATGGTCAGGGGAAGATGTTAGTGACAACTGTTGGCATGAGAACTGAATGGGGAAAGTTGATGGAAACACTAAACGAAGGGGGAGAGGATGAGACCCCATTGCAGGTGAAATTGAATGGAGTTGCTACAATTATTGGTAAGATTGGTTTGGCTTTTGCTGTGCTCACATTTTTGGTGTTGACAATAAGGTTTCTGGTGGAAAAAGCACTTCATGGTGAGTTTGCTAATTGGTCTTCAAATGATGCAATGAAGCTGCTGGACAACTTTGCGATTGCCGTAACCATAATAGTTGTTGCAGTTCCTGAAGGATTACCATTGGCTGTGACACTCAGCCTTGCTTTTGCTATGAAAAAATTAATGAATGACAGGGCACTTGTGAGGCATCTTTCTGCATGTGAGACAATGGGTTCCGCCACTTGCATTTGCACGGATAAGACAGGGACATTGACTACTAACCGTATGGTGGTTGATAAAATATGGATATGCAAAAAAGCCATGGAGATGAAAGGTAATGAGAGTGGGGACAAGCTGAGAACGGAGATATCTAAAGCAGTTCTGAGCATCCTTTTGCAGGCTATATTTCAAAATACTTCTTCTGAAGTAGTTAAGGATAAGGATGGAAAAAACACAATATTGGGAACACCAACAGAATCAGCATTATTGGAATTTGGCTTGCGTTTGGGGGGTGATTTTGACGCCCAGCACAGAGAGTATAAGATACTTATGATTGAGCCTTTCAATTCAGTCCGGAAGAAGATGTCTGTCCTCGTGGGTCTTCCTGATGGAGGGGTGCGAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAGAATGTGTGACAAAGTTATTGATTGCAATGGAAATCCTGTTGATCTTCCTGAAGACCAGGCAAAGAATGTCTCTGATGTTATAAACCGTTTTGCCTCTGAAGCTTTAAGAACTCTTTGCTTGGCTGTCAAAGATATAAATGATACTCGTGGGGAAACCAGCATCCCTGATAATGGCTATACACTGATAGCCATTGTAGGGATCAAGGATCCTGTGCGACCTGGGGTCAAGGATGCTGTTCAAACTTGTTTAGCGGCTGGAATAACTGTTCGTATGGTCACTGGTGATAATATAAATACAGCTAAGGCTATAGCTAAAGAATGTGGCATACTTTCTGAAGGTGGTTTAGCCATAGAAGGACCAGAATTTCGAAACTTGTCACCAGAGCAAATGAAGGATACCATACCTAGAATTCAGGTAATGGCACGATCCTTACCGCTTGACAAACATACTTTAGTAACTCATTTGCGGAAAATGTTTGGCGAGGTTGTTGCTGTTACTGGCGATGGAACGAATGATGCTCCTGCACTGCATGAATCAGACATTGGACTTGCCATGGGCATAGCTGGAACCGAGGTTGCAAAAGAAAATGCTGATGTCATTATAATGGACGATAATTTCACGACTATTGTCAGTGTGGCCAAATGGGGACGGGCAGTGTACATAAACATTCAAAAATTTGTGCAGTTTCAGCTAACAGTCAACGTTGTTGCTCTGGTGATCAACTTTGTTTCTGCATGCATCACAGGATCTGCTCCGCTAACAGCTGTACAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTGGCCCTGGCCACTGAACCTCCTAACGATGGACTTATGAAAAGGCCCCCAGTTGGAAGGGGAGCAAGTTTTATCACCAAACCTATGTGGAGGAATATCATGGGTCAAAGTATATATCAATTAATTGTCCTTGCAATTCTCAATTTTGACGGGAAGAGGCTACTGGGAATTAGTGGTTCAGATGCAACTATTGTCCTCAACACGTTGATATTCAACTCCTTTGTCTTTTGTCAGGTTTTTAATGAGATCAACAGCCGTGACATAGAAAAGATAAACATATTTAGAGGCATGTTTGACAGCTGGATGTTTTTATTGGTAATATTTTCCACAGTGACATTTCAAGCAATCATAGTTGAGTTCCTGGGAGCTTTTGCCAGCACTGTGCCTCTAAACTGGCAACTCTGGTTACTCAGTATCTTAATTGGAGCAGTGAGCATGCCTATAGCTGTTATCCTGAAGTGCATTCCAGTTGAAAGAGATTCTTCTAAACACCACGATGGTTATGACGCACTGCCTTCTGGTCCTGAGCTGGCGTAA 3201 0.4289 MGSHYSWSLISFFAKSLCSEQKEIQGRCRSLILEAMESLLKDFELESKNPSTEAMRRWRSAVWLVKNHRRRFRMVADLDKRSEAEKIKKKIQAKIRIALYVQKAALQFVDGVRVDSSLSDETRKAGFGINPDDIASIVRGHDYKKLRIIGGVEGIATKLSVLVDEGVSGNSINTRQQIYGSNRYTEKPSRTFLMFVWEALHDLTLIILMICALVSIGVGIATEGWPKGVYDGLGIILSIFLVVIVTAVSDYQQSLQFRDLDKEKKKIIVQVTRDGKRQKISIYDLVVGDIVHLSTGDQVPADGVFIWGYSLLIDESSLSGESEPVNVNEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLAFAVLTFLVLTIRFLVEKALHGEFANWSSNDAMKLLDNFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSATCICTDKTGTLTTNRMVVDKIWICKKAMEMKGNESGDKLRTEISKAVLSILLQAIFQNTSSEVVKDKDGKNTILGTPTESALLEFGLRLGGDFDAQHREYKILMIEPFNSVRKKMSVLVGLPDGGVRAFCKGASEIILRMCDKVIDCNGNPVDLPEDQAKNVSDVINRFASEALRTLCLAVKDINDTRGETSIPDNGYTLIAIVGIKDPVRPGVKDAVQTCLAAGITVRMVTGDNINTAKAIAKECGILSEGGLAIEGPEFRNLSPEQMKDTIPRIQVMARSLPLDKHTLVTHLRKMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVSVAKWGRAVYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMKRPPVGRGASFITKPMWRNIMGQSIYQLIVLAILNFDGKRLLGISGSDATIVLNTLIFNSFVFCQVFNEINSRDIEKINIFRGMFDSWMFLLVIFSTVTFQAIIVEFLGAFASTVPLNWQLWLLSILIGAVSMPIAVILKCIPVERDSSKHHDGYDALPSGPELA 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1374 1066 PRINTS P-type cation-transporting ATPase superfamily signature 703 713 - -
Glsi11g1374 1066 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Glsi11g1374 1066 PRINTS P-type cation-transporting ATPase superfamily signature 681 692 - -
Glsi11g1374 1066 PRINTS P-type cation-transporting ATPase superfamily signature 314 328 - -
Glsi11g1374 1066 PRINTS P-type cation-transporting ATPase superfamily signature 784 803 - -
Glsi11g1374 1066 PRINTS P-type cation-transporting ATPase superfamily signature 808 820 - -
Glsi11g1374 1066 Gene3D - 493 688 IPR023299 GO:0000166
Glsi11g1374 1066 Gene3D - 198 1043 - -
Glsi11g1374 1066 Gene3D - 480 829 IPR023214 -
Glsi11g1374 1066 FunFam Calcium-transporting ATPase 493 688 - -
Glsi11g1374 1066 FunFam Calcium-transporting ATPase 801 1047 - -
Glsi11g1374 1066 Pfam Cation transporting ATPase, C-terminus 869 1042 IPR006068 -
Glsi11g1374 1066 PRINTS H+-transporting ATPase (proton pump) signature 784 800 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1374 1066 PRINTS H+-transporting ATPase (proton pump) signature 816 841 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1374 1066 PRINTS H+-transporting ATPase (proton pump) signature 641 659 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1374 1066 SUPERFAMILY HAD-like 482 889 IPR036412 -
Glsi11g1374 1066 Pfam Cation transport ATPase (P-type) 539 623 - -
Glsi11g1374 1066 FunFam Calcium-transporting ATPase 198 255 - -
Glsi11g1374 1066 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 693 IPR023299 GO:0000166
Glsi11g1374 1066 SFLD C1.7: P-type atpase like 465 836 - -
Glsi11g1374 1066 NCBIfam HAD-IC family P-type ATPase 754 872 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1374 1066 NCBIfam HAD-IC family P-type ATPase 235 506 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1374 1066 NCBIfam HAD-IC family P-type ATPase 580 728 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g1374 1066 SFLD p-type atpase 465 836 IPR044492 -
Glsi11g1374 1066 FunFam Calcium-transporting ATPase 50 110 - -
Glsi11g1374 1066 PANTHER CATION TRANSPORTING ATPASE 118 1045 - -
Glsi11g1374 1066 Pfam Cation transporter/ATPase, N-terminus 151 215 IPR004014 -
Glsi11g1374 1066 CDD P-type_ATPase_Ca_PMCA-like 172 917 - -
Glsi11g1374 1066 SUPERFAMILY Calcium ATPase, transmembrane domain M 150 1045 IPR023298 -
Glsi11g1374 1066 SMART Cation_ATPase_N_a_2 142 220 IPR004014 -
Glsi11g1374 1066 Gene3D - 166 366 - -
Glsi11g1374 1066 Gene3D - 50 110 - -
Glsi11g1374 1066 ProSitePatterns E1-E2 ATPases phosphorylation site. 485 491 IPR018303 -
Glsi11g1374 1066 FunFam Calcium-transporting ATPase 245 366 - -
Glsi11g1374 1066 Pfam Ca2+-ATPase N terminal autoinhibitory domain 40 83 IPR024750 GO:0005516
Glsi11g1374 1066 SUPERFAMILY Calcium ATPase, transduction domain A 268 364 IPR008250 -
Glsi11g1374 1066 Pfam E1-E2 ATPase 267 461 - -
Glsi11g1374 1066 NCBIfam calcium-translocating P-type ATPase, PMCA-type 144 1046 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Glsi11g1374 1066 FunFam Calcium-transporting ATPase 681 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1374 Glsi-ChrGlsi11 8637717 8644631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1374 94 1063 Primary Pumps ATPases AT3G57330 74.897 0.0 1494
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2317 02 73483137 73490747 Glsi11g1374 11 8637717 8644631 CCT
Glsi11g1374 11 8637717 8644631 Glsi11g1374 11 8637717 8644631 ECH