Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1368 ATGTTGTTAGGTTCAGTGTTGGGTGGAGAAGAAAAGGAAGCAACTTTGAGAAAGAAAACGATGGGTAGAGGGAAAATTGAGATAAAAAAGATAGAGAATTTGAATAGCAGGCAGGTCACCTTCTCCAAGCGACGTAATGGGTTGCTCAAAAAAGCCAAGGAGTTGTCCGTTTTATGTGATGCAGAGGTCGCTGTCATCGTTTTCTCTGCCACCGGAAAGCTTTATCAGTTTTCTAGCACAAGCATGGAGCACATCATTTCAAGATACAGCAAAGGCCTGCAATGGGATTATGCAGAGCAACCTTTTAACAAGTCACCAACGGAGGGCATGGAGCCTGAGACAAGGCTTCTGAAGGATGAAATAACAAAACTTCGTTCAGCGTACTTAAGGATGATGGGTAAGGAGCTTGAAGGTTTGGATTTTAAAGAGCTGCAGCAGCTCGAAAGTCAACTGAGTGAAGGGATACTTTCTGTTAAAAACAAGAAGTTAATGTCGTCAGATTTTATAGCACATGAGCATTCTGATTTAAACTATAGTTATAAACTGTTGCAGGAACAGATAGTCCTAGAGCAACTTAGGAGGTCCAGAGTACAGGAGCAAAAGGCCATGCAGGAGAATGAAACTCTGCGCAAACAACTTGAGGAGATGCAGACTACAACAAAGGCACACTTTCTAGAATTTAATCCTTCAATCAAAGCTTCTCAACCTATTTTCAATTGTGCTTCGGATGAAAACGAGCTCTCAGACACTTCCTTACAGTTGGGGTTGTCAACAGATTATGGTCGCAAGAGAAAATCACTGAAGATAGAACCTTGCAACGACTCAGGGAGTCAAGTGGCCTCGGAGTGA 849 0.4252 MLLGSVLGGEEKEATLRKKTMGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIVFSATGKLYQFSSTSMEHIISRYSKGLQWDYAEQPFNKSPTEGMEPETRLLKDEITKLRSAYLRMMGKELEGLDFKELQQLESQLSEGILSVKNKKLMSSDFIAHEHSDLNYSYKLLQEQIVLEQLRRSRVQEQKAMQENETLRKQLEEMQTTTKAHFLEFNPSIKASQPIFNCASDENELSDTSLQLGLSTDYGRKRKSLKIEPCNDSGSQVASE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1368 282 SUPERFAMILY SRF-like 22 97 IPR036879 GO:0003677|GO:0046983
Glsi11g1368 282 FunFam MADS-box transcription factor MADS-MC 33 105 - -
Glsi11g1368 282 CDD MADS_MEF2_like 22 92 IPR033896 GO:0000977|GO:0045944
Glsi11g1368 282 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 77 IPR002100 GO:0003677|GO:0046983
Glsi11g1368 282 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 203 - -
Glsi11g1368 282 SMART madsneu2 21 80 IPR002100 GO:0003677|GO:0046983
Glsi11g1368 282 Coils Coil 189 219 - -
Glsi11g1368 282 ProSitePatterns MADS-box domain signature. 23 77 IPR002100 GO:0003677|GO:0046983
Glsi11g1368 282 Gene3D - 33 100 IPR036879 GO:0003677|GO:0046983
Glsi11g1368 282 ProSiteProfiles MADS-box domain profile. 21 81 IPR002100 GO:0003677|GO:0046983
Glsi11g1368 282 Pfam K-box region 108 213 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g1368 282 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Glsi11g1368 282 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677|GO:0046983
Glsi11g1368 282 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677|GO:0046983
Glsi11g1368 282 ProSiteProfiles K-box domain profile. 107 219 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1368 Glsi-ChrGlsi11 8603794 8606348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1368 21 264 MADS-box Gene Family AT5G13790 43.750 5.86e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi11g1368 K-box 2.7e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1368 11 8603794 8606348 Glsi11g1368 11 8603794 8606348 ECH