Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1363 ATGGAAGATTTGAAGCATAAAGAGTTGTTGGAACATGCGAGGAAGCCGAACCCACCACCTTTCTTGTTGAAGACGTACATGCTGGTGGAGGATCCGGCCACCGACGATATCATATCGTGGAACGCCGACGGGACGGCCTTCGTGGTGTGGCAGCCGGCGGAGTTTGCCCGTGATCTCCTTCCAACACTCTTCAAGCACAGCAATTTCTCTAGCTTCGTTCGGCAGCTGAATACATATGGTTTTCGTAAAGTTGCGACAAGCAGATGGGAATTTTGCAATAACCGGTTTAAGAAGGGTGAGAAAGAACAGCTGAGTGAGATTCGTCGAAGAAAAGCTTGGGCCAGCAAACAACCACCTACTAGTGTAGCATCACCAGTACAAGGCCAGCCTGAGGAATATTGTGATGAAGATCAAAGGTCTTCTTCAACCTCTTCGTCTTCTGGTTATTCTACTCTTATGGATGAAAACAGGCGACTAAAGAAAGAGAATGGGTTATTGAGCTCTGAGCTCACAGCCATGAAAAGAAAGTGTAAGGAGCTGCTTGATTTGGTGGCTAAACATGCAAATCCAAAGAAAGAGCAGGAAGACGAGAGGCTAATGTTATTTGGGGTGAGACTGGACGTTCAAGGAGAGAGAGCTGTGAAGAGAAAGATAACTCATGACATCAGCGACAGCCCAAGCATTTTGCTGTCTCAGTCATGCAAATAG 708 0.4675 MEDLKHKELLEHARKPNPPPFLLKTYMLVEDPATDDIISWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNNRFKKGEKEQLSEIRRRKAWASKQPPTSVASPVQGQPEEYCDEDQRSSSTSSSSGYSTLMDENRRLKKENGLLSSELTAMKRKCKELLDLVAKHANPKKEQEDERLMLFGVRLDVQGERAVKRKITHDISDSPSILLSQSCK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1363 235 Gene3D - 12 111 IPR036388 -
Glsi11g1363 235 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Glsi11g1363 235 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g1363 235 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g1363 235 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g1363 235 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g1363 235 MobiDBLite consensus disorder prediction 139 153 - -
Glsi11g1363 235 MobiDBLite consensus disorder prediction 109 154 - -
Glsi11g1363 235 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 188 IPR027725 -
Glsi11g1363 235 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g1363 235 Coils Coil 156 176 - -
Glsi11g1363 235 FunFam Heat stress transcription factor B-4 13 111 - -
Glsi11g1363 235 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1363 Glsi-ChrGlsi11 8550676 8551780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1363 18 207 HSF AT2G41690 56.039 1.23e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi11g1363 HSF_DNA-bind 1.3e-31 CL0123