Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1351 ATGGAAATTCTGTGCTGGTTGTATTTTGTGCTTGCTTGGTATCTGTCAAAATCTCAGCTTGTGGGTGCTGAGATTCAGGATCAAATTATATTGCTTGCCATTAACCAAGAGCTTAAAGTGCCTGGATGGGATGCCAACAACTCCAATTACTGCTCTTGGCCAGGCGTTAGATGCGGTAATCACTCAATGGTGGAGAAGCTCGATCTCTCTCATGGGAATCTTCGAGGTAATGTAACTTTAGTGTCCGAGCTCAAAGCTTTGAGGCGGCTTGACCTGTCAAATAATAATTTTCATGGATTGATTCCTCCAGCTTTTGGAAATTTATCTGATCTTGAAGTTTTAGATTTGTCAGCAAATAAATTCGAAGGTTCAATTCCACCAGAATTGGGTGGCCTCAGAAACCTTAAATCGTTAAACCTTTCCAATAACTTGCTTGTGGGGAAACTACCAGACGAACTTCAAGGCCTAGAGAAATTGCAGGAATTTCAAATTTCCAGTAACCAATTGAGTGGTTCAGTACCTTCTTGGGTGGGCAATTTGACCAATCTTAGAGTATTTGCAGCCTATGAGAATCATCTAGATGGTAACATTCCAGATAATCTGGGCTTGGCTTCGGAGCTTCGAATACTTAACCTGCACTCAAACCAGCTTGAAGGGCCAATACCGGCAGGCATTTTTACTCCAGGGAAGCTGGAAGTTCTGGTTCTCACCCAGAACAACTTTAGTGGCGATCTTCCTAAAGAACTTGGGAATTGCCAAGGCCTATCCAACATCCGAATTGGCAACAATCATCTAGTAGGTACTATTCCTAAGACCATTGGAAACATTAGTAGCCTTACCTACTTTGAAGCGGACAATAACAATCTTTCTGGTGAGGTAGTGTCCGAATTTTCTCAGTGTTCTAATCTCACCCTCCTGAACTTAGCTTCAAATGGGTTTAGCGGAACAATTCCGCCAGAATTTGGACAACTTATGAACTTGCAGGAATTAATTCTTTCTGGAAATCGCCTATGTGGCGATATTCCAAAGTCGATTTTGAGGTGCAAGAATCTTAACAAGCTTGATATAAGCTATAACAGATTCAATGGAACAATACCAAATGAAATCTGCAATTTGTCTAAGTTGCAGTTCTTGCTATTGGGTCAGAATTCCATAAGAGGAGAGATCCCTCATGAAATTGGAAACTGTGCAAAACTTCTTGAATTGCAAATGGGCAGTAACTATTTGACAGGAATTATTCCTTCCGAGGTTGGTCACATCAGGAACTTACAGATAGCTTTAAATATGAGCTACAATCATATTCATGGACCACTGCCCCCTGAACTAGGAAGACTGGACAAACTTGTTTCTCTGGATGTTTCAAACAATCGGCTCTCAGGTACTATCCCAGCTGAGCTTAAGGGAATGTTGAGTTTGATAGAGGTTAACTTTTCAAATAATTTGCTGAGTGGCCCAGTACCAACATTTGTACCATTCCAAAAGAGTCCTAATTCAAGTTTTTTGGGCAATAAAGGGCTTTGTGGAGAGCCATTAAACTCTACATGCGGAAATCTTTATGATGACCACAATAATTATCATCACAGAGTTTCTTACAGAATCATACTAGCCGTAATTGGTTCTGGTTTGGCAGTTTTTATGTCAGTTACTGTGGTGGTCTTGCTGTTTATGATCAGAGAGAGGCAGGAAAAAGCAGCCAAAGATGCCGGGATTGCTGATGATGGAGCTAACAGTAAATTAACTATAATAGCGGGGAGTGTTTTTGTTGAGAATCTAAGACAAGCAGTAGACCTTGATGCCGTTGTTAAGGCAACTTTGAAGGATTCTAATAAGCTTAGCAGTGGAACTTTCAGCACAGTTTACAAGGCAGTCATGCCTTCTGGGATGATCTTATCTGTAAGGAGACTCAAGTCCATGGACAAGACAATAATCCATCACCAGAACAAGATGATTAGAGAACTTGAAAGGCTGAGCAAACTGTGTCATGATAATCTAGTGCGCCCGATAGGGTATGTTATTTATGAAGATATTGCTCTTCTCTTGCATCAATATTTACCCAACGGTACATTAGCTCAGCTTCTTCATGAATCTACCAAGCAACCTGAATATCAACCTGACTGGCCCACTAGACTATCCATTGCCATCGGAGTGGCAGAAGGTTTGGCTTTTCTTCATCACGTGGCAATTATCCACCTTGACATTTCTTCTGGCAATGTTCTTTTGGATGCAAATTTTAAGCCTTTGGTTGGGGAGATCGAGATATCAAAACTTCTAGATCCAACCAGAGGAACTGCAAGCATTAGTGCTGTTGCTGGTTCCTTTGGTTACATACCACCAGAGTATGCATATACAATGCAAGTTACAGCACCGGGAAATGTTTATAGCTATGGCGTTGTTCTGCTCGAGATCCTAACTACTAGACCACCTGTTGATGAGGATTTTGAAGAAGGCGTAGATTTGGTGAAGTGGGTTCATAGTGCTCCAGTAAGAGGGGAAACTCCAGAGCAGATACTGGATGCAAGGCTTAGCACAGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTCTAAAGGTTGCATTGCTCTGCACTGATACTACACCAGCAAAACGACCAAAGATGAAGAAGGTAGTGGAAATGCTCCAAGAAATAAAGCAAAACTGA 2661 0.4149 MEILCWLYFVLAWYLSKSQLVGAEIQDQIILLAINQELKVPGWDANNSNYCSWPGVRCGNHSMVEKLDLSHGNLRGNVTLVSELKALRRLDLSNNNFHGLIPPAFGNLSDLEVLDLSANKFEGSIPPELGGLRNLKSLNLSNNLLVGKLPDELQGLEKLQEFQISSNQLSGSVPSWVGNLTNLRVFAAYENHLDGNIPDNLGLASELRILNLHSNQLEGPIPAGIFTPGKLEVLVLTQNNFSGDLPKELGNCQGLSNIRIGNNHLVGTIPKTIGNISSLTYFEADNNNLSGEVVSEFSQCSNLTLLNLASNGFSGTIPPEFGQLMNLQELILSGNRLCGDIPKSILRCKNLNKLDISYNRFNGTIPNEICNLSKLQFLLLGQNSIRGEIPHEIGNCAKLLELQMGSNYLTGIIPSEVGHIRNLQIALNMSYNHIHGPLPPELGRLDKLVSLDVSNNRLSGTIPAELKGMLSLIEVNFSNNLLSGPVPTFVPFQKSPNSSFLGNKGLCGEPLNSTCGNLYDDHNNYHHRVSYRIILAVIGSGLAVFMSVTVVVLLFMIRERQEKAAKDAGIADDGANSKLTIIAGSVFVENLRQAVDLDAVVKATLKDSNKLSSGTFSTVYKAVMPSGMILSVRRLKSMDKTIIHHQNKMIRELERLSKLCHDNLVRPIGYVIYEDIALLLHQYLPNGTLAQLLHESTKQPEYQPDWPTRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRPPVDEDFEEGVDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDTTPAKRPKMKKVVEMLQEIKQN 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1351 886 Gene3D Transferase(Phosphotransferase) domain 1 684 886 - -
Glsi11g1351 886 Gene3D Ribonuclease Inhibitor 276 523 IPR032675 -
Glsi11g1351 886 Pfam Leucine rich repeat 326 385 IPR001611 GO:0005515
Glsi11g1351 886 Pfam Leucine rich repeat 86 145 IPR001611 GO:0005515
Glsi11g1351 886 SUPERFAMILY Protein kinase-like (PK-like) 605 883 IPR011009 -
Glsi11g1351 886 Gene3D Ribonuclease Inhibitor 173 272 IPR032675 -
Glsi11g1351 886 CDD STKc_IRAK 611 883 - -
Glsi11g1351 886 Pfam Leucine rich repeat N-terminal domain 41 58 IPR013210 -
Glsi11g1351 886 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 882 - -
Glsi11g1351 886 SMART LRR_typ_2 324 348 IPR003591 -
Glsi11g1351 886 SMART LRR_typ_2 445 468 IPR003591 -
Glsi11g1351 886 SMART LRR_typ_2 372 396 IPR003591 -
Glsi11g1351 886 SMART LRR_typ_2 84 107 IPR003591 -
Glsi11g1351 886 SMART LRR_typ_2 108 131 IPR003591 -
Glsi11g1351 886 SMART LRR_typ_2 156 180 IPR003591 -
Glsi11g1351 886 SMART LRR_typ_2 132 155 IPR003591 -
Glsi11g1351 886 SMART LRR_typ_2 205 228 IPR003591 -
Glsi11g1351 886 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 224 518 - -
Glsi11g1351 886 Gene3D Ribonuclease Inhibitor 25 172 IPR032675 -
Glsi11g1351 886 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 25 173 - -
Glsi11g1351 886 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 575 683 - -
Glsi11g1351 886 SUPERFAMILY L domain-like 192 518 - -
Glsi11g1351 886 Pfam Protein tyrosine and serine/threonine kinase 608 880 IPR001245 GO:0004672|GO:0006468
Glsi11g1351 886 SUPERFAMILY L domain-like 41 297 - -
Glsi11g1351 886 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 684 886 - -
Glsi11g1351 886 Gene3D Phosphorylase Kinase; domain 1 574 683 - -
Glsi11g1351 886 ProSitePatterns Tyrosine protein kinases specific active-site signature. 728 740 IPR008266 GO:0004672|GO:0006468
Glsi11g1351 886 ProSiteProfiles Protein kinase domain profile. 605 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1351 Glsi-ChrGlsi11 8466488 8469266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1351 1 885 Receptor kinase-like Gene Family AT2G41820 73.198 0.0 1321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi11g1351 PK_Tyr_Ser-Thr 3.8e-27 CL0016