Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1347 ATGGGAACTCCTGAATTCCCAGATCTAGGAAGGCATTGCAGCCTAGATGATTGCAATCAGATAGATTTCTTGCCCTTCACCTGCAATCGCTGTAACAAGGTGTACTGTTTAGAGCACCGCAGTTATATTAAACATCATTGTTCAAAAGCTGACAGACTAGATGTCACTGTTGTCATATGTCCCCTTTGTGCCAAAGGAGTTCGACTAATTCCTGATCAAGATCCAAACATAAGTTGGGATACTCATGTTAACACCGAGTGTGACCCATCAAATTATGATAAAGTCACGAAGAAGAAAAAATGCCCTGCCCCTGGATGTAGAGAGATCTTAGTATTCTCGAACACGATAAAGTGCAGGGACTGCATGGTAGACCACTGTTTGAAGCACCGTTTTGGACCTGATCACAAATGTCCGGGGCCCAAAAAGTTGGAAACAAGTTTTTCATTTGTGAGTTTTTTGAATAAGAGTGGAAAAGAGAAGTCAAAGCCCGGTTTAACTTCAACTACATCATCAAAATGGAGCACAAGCTTCCTTAATGTGGCTTCTAACATTCGAGCTTCGACTGCATCAGGCATGGCAAGATTGAGTGGTGAAATTAACCAAGCTTGGCTGACAGCAAGGGATGGGTTGGGACAGAGCAGTAGCGGTGGTAATGGAAGTGGTCCATTGGAGCAATGCCCTCAGTGTGGTGCTAAGTTTTCCTCAGTCACTACCTTGGTGGATCATGTGCAAAAAGCACATGAAAGGAAGGGCAGCCGATCTGGGCCGAAGAAGGGTTCAATGGATGTTTGTCCTACGTGTAGCAGAGGATTTCGAGACCCGGTCTCCCTTGTGGAGCATGTTGAGAGGGACCATGGTGGCTCTTCAAGAGTGTAG 876 0.4532 MGTPEFPDLGRHCSLDDCNQIDFLPFTCNRCNKVYCLEHRSYIKHHCSKADRLDVTVVICPLCAKGVRLIPDQDPNISWDTHVNTECDPSNYDKVTKKKKCPAPGCREILVFSNTIKCRDCMVDHCLKHRFGPDHKCPGPKKLETSFSFVSFLNKSGKEKSKPGLTSTTSSKWSTSFLNVASNIRASTASGMARLSGEINQAWLTARDGLGQSSSGGNGSGPLEQCPQCGAKFSSVTTLVDHVQKAHERKGSRSGPKKGSMDVCPTCSRGFRDPVSLVEHVERDHGGSSRV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1347 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Glsi11g1347 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Glsi11g1347 291 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Glsi11g1347 291 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Glsi11g1347 291 Gene3D - 80 148 IPR035896 -
Glsi11g1347 291 Gene3D - 2 56 IPR035896 -
Glsi11g1347 291 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Glsi11g1347 291 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Glsi11g1347 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Glsi11g1347 291 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Glsi11g1347 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Glsi11g1347 291 SUPERFAMILY AN1-like Zinc finger 56 143 IPR035896 -
Glsi11g1347 291 SMART c2h2final6 224 247 IPR013087 -
Glsi11g1347 291 SMART c2h2final6 262 285 IPR013087 -
Glsi11g1347 291 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Glsi11g1347 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
Glsi11g1347 291 MobiDBLite consensus disorder prediction 275 291 - -
Glsi11g1347 291 Gene3D Classic Zinc Finger 203 288 - -
Glsi11g1347 291 MobiDBLite consensus disorder prediction 243 291 - -
Glsi11g1347 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 290 IPR013087 -
Glsi11g1347 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1347 Glsi-ChrGlsi11 8442481 8443990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1347 1 291 C2H2 Transcription Factor Family AT2G41835 59.661 1.05e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g1347 zf-AN1 9.9e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2349 02 73826103 73828894 Glsi11g1347 11 8442481 8443990 CCT
Glsi11g1347 11 8442481 8443990 Glsi11g1347 11 8442481 8443990 ECH