Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1345 ATGCAAATACACGCGCTTGTTGTACTCGCTAGTCTTGTGTCCCCCAGTTGGGGCTTTCGCTCTTGCGGCAGTGAGTTTTGCGCTCGGAGTCTATTTCTATCATCATTACCTACAATGGCTGAACGTGGTGGTGGAGACCGTGGTGGTTTTGGCCGTGGCTTTGGTGGTCGTGGTGGACGCGGTGACCGTGGTCGTGGAGGCCGCCGCAGAGGCGCTGGTCGCCGCGAAGAGGAGGAGAAGTGGGTTCCTGTGACCAAGCTAGGTCGTCTCGTTAAAGAGGGAAGGATTCGCAGCCTCGAGCAGATCTACCTTCACTCTCTACCAATCAAGGAACACCAGATCATCGATACCTTGGTTGGTCCCAGCCTCAAGGACGAGGTCATGAAGATCATGCCCGTCCAGAAACAGACCCGGGCCGGCCAGAGGACCCGGTTCAAGGCCTTTGTTGTCGTTGGTGACTGCAACGGACATGTGGGATTGGGCGTTAAGTGTAGCAAGGAGGTCGCCACGGCCATTCGTGGTGCTATTATATTGGCCAAGCTTTCAGTGATTCCTGTGAGAAGAGGTTACTGGGGTAACAAGATCGGGAAGCCTCATACAGTCCCGTGCAAGGTTACCGGGAAGTGTGGTTCAGTCACAGTGCGGATGGTTCCTGCCCCTCGTGGTGCTGGAATCGTTGCTGCTAGGGTGCCGAAGAAGGTGTTGCAGTTTGCAGGAATCGAGGATGTCTTCACTTCTTCAAGAGGGTCGACTAAGACTCTTGGAAATTTCGTTAAGGCAACTTTTGATTGTTTGCTGAAAACCTACGGGTTTCTAACACCTGACTTCTGGAAGGAAACCCGATTCTCTAAATCTCCATTCCAAGAGTACACGGATCTGTTGGCAAAGCCAACAGGGAAGGCCCTAATACTGGAGGAGGAGAGGGTGGATGCTTGA 936 0.5331 MQIHALVVLASLVSPSWGFRSCGSEFCARSLFLSSLPTMAERGGGDRGGFGRGFGGRGGRGDRGRGGRRRGAGRREEEEKWVPVTKLGRLVKEGRIRSLEQIYLHSLPIKEHQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDCNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPDFWKETRFSKSPFQEYTDLLAKPTGKALILEEERVDA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1345 311 Gene3D - 80 185 - -
Glsi11g1345 311 Pfam Ribosomal protein S5, N-terminal domain 123 187 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi11g1345 311 FunFam 40S ribosomal protein S2 186 279 - -
Glsi11g1345 311 SUPERFAMILY dsRNA-binding domain-like 119 188 - -
Glsi11g1345 311 MobiDBLite consensus disorder prediction 44 78 - -
Glsi11g1345 311 NCBIfam 30S ribosomal protein S5 76 283 IPR005711 GO:0003735|GO:0006412|GO:0015935
Glsi11g1345 311 ProSiteProfiles S5 double stranded RNA-binding domain profile. 123 186 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi11g1345 311 Pfam Ribosomal protein S5, C-terminal domain 207 279 IPR005324 GO:0003735|GO:0005840|GO:0006412
Glsi11g1345 311 Gene3D - 186 279 IPR014721 -
Glsi11g1345 311 FunFam 40S ribosomal protein S2 80 185 - -
Glsi11g1345 311 PANTHER RIBOSOMAL S SUBUNIT 72 269 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi11g1345 311 SUPERFAMILY Ribosomal protein S5 domain 2-like 199 279 IPR020568 -
Glsi11g1345 311 ProSitePatterns Ribosomal protein S5 signature. 140 172 IPR018192 -
Glsi11g1345 311 MobiDBLite consensus disorder prediction 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1345 Glsi-ChrGlsi11 8439064 8441387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1345 77 299 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.583 1.59e-150 421