Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1342 ATGGGTAATTGTTGCGTAACTCCATCGGGCCCTCCCGAGAAGAAGAAGAAGGAAAAGAAGGAAAAGAAGAAACAGAACCCATTTGCGATTGATCACGGCCACAATAACTATGAAAATGGTGAAAGCAAGATCTACGTTTTGAAGGAGCCGACGGGCCGCGAAATTGAGCTCAGATACGAGCTGGGTCGCGAGCTTGGAAGAGGAGAATTCGGAGTTACCTACTTGTGCACAGATAAAGAGACGGGTGACAATTTCGCTTGCAAATCGATATCGAAGAAAAAGTTGAGAACAGCTGTTGATATCGAGGACGTGAGAAGAGAAGTCGAGATTATGAAGCATTTGCCAAAGCACCCAAATATTGTGAGCTTAAAGGACACGTACGAGGACGACATTGCGGTTCATCTTGTGATGGAATTGTGCGAGGGAGGAGAATTGTTCGATCGGATAGTTGCGCGCGGGCACTACACAGAACGTGCCGCTGCTGTTGTCACACGGACAATAGTCGAAGTTGTGCAGATGTGCCACAAACATGGTGTTATGCATAGGGATCTCAAACCTGAGAACTTTTTGTTTGCAAACAAGAAGGAAACATCGCCTCTGAAGGCTATTGATTTTGGATTGTCAGTGTTCTTTAAACCTGGTGAAAAATTTACTGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTGCTAAAACGAAATTATGGCCCAGAGGTAGATATCTGGAGTGCTGGAGTAATTCTTTACATCTTACTTTGTGGCGTTCCACCTTTTTGGGCAGAAACTGAACAGGGAGTTGCACAAGCAATTATACGATCTACTATTAATTTTAAAAGGGATCCATGGCCAAAAGTTTCTGATAATGCGAAAGACCTTGTGAAGAAGATGCTTAATCCTGACCCAAAGCAGCGTCTTACTGCTCAGGAAGTGCTAGATCATCCATGGATACAGAATGCAAAGAAAGCTCCTAATGTTTCATTGGGAGAAACTGTTAGGGCAAGACTCAAGCAATTTTCTGTCATGAACAAGCTTAAGAAAAGAGCTCTGGGGGTGATTGCCGAGCATTTGTCAGTGGAAGAAGTTGCTGGATTAAAAGAAAGATTCCAGCAGATGGATATAGGCAACAGAGGCAAGATTAACATTGATGAGCTACGAGTAGGGTTGCATAAATCAGGCCATCCAATTCCTGATGCAGATCTTCAAATTCTGATGGAAGCTGGCGACGTAGATAGGGATGGATACCTGGATTATGGAGAGTTTGTAGCCATTTCTGTTCATCTGAAGAAGATGGCCAATGATGAGCACCTTCACAAAGCTTTCCAATTTTTTGACCAGAACAAAAGTGGGTATATAGAACTTGAGGAGTTACGGGAAGCCCTAGCTGATGAAGTTGATAGGAACAGTGAAGAAGTAATTAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTTAATGCAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCTAGGCAGTATTCACGAGAGAGATTTAATAGTTTGAGTCTGAAATTGATGAGGGACGGGTCGTTGCAATTAAGCAATGAGAACGACGAAGCCTTGGTTTTTGGCCTATTCATTAAGATAGATGCAGTTCCTCAGTTGCGTCCAATAACGACGGAACCTTGTTTGTGCTCGTCCTCCTGGAATCAAATTTTAAGAATGTTCTTGCTGACCTGGTGA 1734 0.4296 MGNCCVTPSGPPEKKKKEKKEKKKQNPFAIDHGHNNYENGESKIYVLKEPTGREIELRYELGRELGRGEFGVTYLCTDKETGDNFACKSISKKKLRTAVDIEDVRREVEIMKHLPKHPNIVSLKDTYEDDIAVHLVMELCEGGELFDRIVARGHYTERAAAVVTRTIVEVVQMCHKHGVMHRDLKPENFLFANKKETSPLKAIDFGLSVFFKPGEKFTEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSTINFKRDPWPKVSDNAKDLVKKMLNPDPKQRLTAQEVLDHPWIQNAKKAPNVSLGETVRARLKQFSVMNKLKKRALGVIAEHLSVEEVAGLKERFQQMDIGNRGKINIDELRVGLHKSGHPIPDADLQILMEAGDVDRDGYLDYGEFVAISVHLKKMANDEHLHKAFQFFDQNKSGYIELEELREALADEVDRNSEEVINAIMHDVDTDKDGRISYEEFNAMMKAGTDWRKASRQYSRERFNSLSLKLMRDGSLQLSNENDEALVFGLFIKIDAVPQLRPITTEPCLCSSSWNQILRMFLLTW 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1342 577 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Glsi11g1342 577 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Glsi11g1342 577 SMART serkin_6 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1342 577 CDD STKc_CAMK 58 316 - -
Glsi11g1342 577 SUPERFAMILY EF-hand 346 524 IPR011992 -
Glsi11g1342 577 FunFam calcium-dependent protein kinase 13 145 325 - -
Glsi11g1342 577 Coils Coil 451 471 - -
Glsi11g1342 577 Pfam Protein kinase domain 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1342 577 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Glsi11g1342 577 PANTHER SERINE/THREONINE-PROTEIN KINASE 36 493 - -
Glsi11g1342 577 SUPERFAMILY Protein kinase-like (PK-like) 58 325 IPR011009 -
Glsi11g1342 577 FunFam Calcium-dependent protein kinase 1 61 144 - -
Glsi11g1342 577 Pfam EF-hand domain pair 365 424 IPR002048 GO:0005509
Glsi11g1342 577 Pfam EF-hand domain pair 435 498 IPR002048 GO:0005509
Glsi11g1342 577 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Glsi11g1342 577 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Glsi11g1342 577 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Glsi11g1342 577 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Glsi11g1342 577 Gene3D Transferase(Phosphotransferase) domain 1 145 325 - -
Glsi11g1342 577 Gene3D - 326 501 - -
Glsi11g1342 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Glsi11g1342 577 MobiDBLite consensus disorder prediction 1 34 - -
Glsi11g1342 577 ProSiteProfiles Protein kinase domain profile. 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1342 577 FunFam Calcium-dependent protein kinase 7 326 501 - -
Glsi11g1342 577 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Glsi11g1342 577 Gene3D Phosphorylase Kinase; domain 1 61 144 - -
Glsi11g1342 577 SMART efh_1 400 428 IPR002048 GO:0005509
Glsi11g1342 577 SMART efh_1 436 464 IPR002048 GO:0005509
Glsi11g1342 577 SMART efh_1 364 392 IPR002048 GO:0005509
Glsi11g1342 577 SMART efh_1 472 500 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1342 Glsi-ChrGlsi11 8422131 8426622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1342 1 534 EF-hand Containing Proteins AT5G19450 80.000 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi11g1342 Pkinase 3e-78 CL0016