Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1338 ATGTACGTCTACCATTCAGAAGCAGATACATATGCAAACGGTTCTGAAGCTGGGTGGTATAGCAGAGGGCACGATGCCTCCTATACAGATATGGTAATGCAAGGCAAAATGAGTTCATTTGTGCCTGCATCTACGGATTACCGCCTTCGCACCCAAACCAAAGAAAAAGGAGGAGTTGTCCCCAGTGCGCCTTCAAGAGTGAATGAATTTCTTGCACCACCATCACAGATGGAGCTTCTTGGCCACTCAGTACTGAACTCTCTCTCGCTCTCTCTCGGACATGCTCAAAGCGTAGGACTGCCATCGGCCCGAATGCTCTTGCCACTGGAAAAGGCAGAGGAGTCTGTTTACGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCAATCACGTGCCAAGGCTCAGCTCAAAAACAAGCTCATCAAAGTCAGAAAGCCCTACCTTCACGAGTCTCGACATTTGCATGCAATGAGAAGAGCAAGAGGCTGTGGTGGGCGTTTCCTCAACACAAAGAAGAATGATCCTATCTCTGCAAACACAACCACCAACTATCATACAACCCTCTCTGCTAATTCAAACTTCAATCCTTACCAACCAGATATCTACTCCACTTTCAATCCCAACAACTACTACTCACAGTTTGTAGGAGATTGCCTCCGGGCTTCACAGGGCCCTCACCATCAATTTACCAACTCCTTCATGATTGGGCGTTAA 720 0.4722 MYVYHSEADTYANGSEAGWYSRGHDASYTDMVMQGKMSSFVPASTDYRLRTQTKEKGGVVPSAPSRVNEFLAPPSQMELLGHSVLNSLSLSLGHAQSVGLPSARMLLPLEKAEESVYVNAKQYHGILRRRQSRAKAQLKNKLIKVRKPYLHESRHLHAMRRARGCGGRFLNTKKNDPISANTTTNYHTTLSANSNFNPYQPDIYSTFNPNNYYSQFVGDCLRASQGPHHQFTNSFMIGR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1338 239 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 71 192 IPR001289 GO:0003700|GO:0006355
Glsi11g1338 239 Gene3D - 112 173 - -
Glsi11g1338 239 ProSiteProfiles NF-YA/HAP2 family profile. 112 172 IPR001289 GO:0003700|GO:0006355
Glsi11g1338 239 SMART cbf3 111 172 IPR001289 GO:0003700|GO:0006355
Glsi11g1338 239 PRINTS CCAAT-binding transcription factor subunit B signature 146 169 IPR001289 GO:0003700|GO:0006355
Glsi11g1338 239 PRINTS CCAAT-binding transcription factor subunit B signature 115 137 IPR001289 GO:0003700|GO:0006355
Glsi11g1338 239 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 115 169 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1338 Glsi-ChrGlsi11 8403716 8405365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1338 94 192 CCAAT-HAP2 Transcription Factor Family AT1G30500 59.596 1.18e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Glsi11g1338 CBFB_NFYA 2.1e-25 No_clan