Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1336 ATGCGTCATGGCGACGGTGACGTGGCATGGAATAATAGCACTTGTGGTATGGGAATTGGAGGATCAAAGGCTAAAGAGTTTATCTTTTGGTGGATCCGACTCGGACAGACAAATAAGGGGAGAGGAAGAGATCGTACCCATGAATTGCAATTGATTAGGACCCACAGGGATGGATCGGAGCAAAAGTTATGGATGCTCGTGAGAGGGAATGAAAATCATCACGAGTTGAGTCCAGGAAATTTCCCCGAGTTAAGGAAAGAAAGTTTCCTCTGGGAGCCCGAGATTCGGTATATTCGAGTTGCAAATTCCCCGTTTTCAGCCCCAGCTTTCAACTGCGACGCTTATGATAGCTGTCTGTGGCGGCTTCTTGAATTTCTGAGATTTTTGACCGTCCTTTCAGATATGCATGAACAGGAGGATTGTCTCCCTAGGTCACCATTTTTGCTATGCATCTTCGTTGGTTTCCTGCTAAATTTCATTGTGATTGCTGAGATTCCGTTGGGTTCGAAACTTTTTGTGGTTGACAATGATTGTTGGGTCTCCTCCAGCGGTGATTTTGCATTAGGATTCTTTAACATTTCGGATCAACCTAACCAGTATAGCATCGGTATTCGTTTCAATTCAAAGTCTATACCAATTAACCAACAAACTGTGGTCTGGGTTGCTGGAGCTCAAGTCACAGTGGGTAATAGGTCATATTTCCATCTCACTCAGGAAGGAGAATTGGTCCTGTTTGATTCCGTACAGGGAATCCCTGCTTGGACCAGTAGAACAGGCAATGGATCTGTTGTTTCAGCGGCTCTTCATGATAATGGCAATCTTGTTCTACAAGACAGAGAGCAAAACATAATTTGGCAAAGTTTTGATACTCCGTCTGATACGCTTCTCCCAGGACAGAGTTTATCAGCTGATCAAATACTTCGAGCTGCAAGCAAGAATCCCATGTCCAGTTACTACAGTCTTTACATGAATGCTTTGGGTCAGTTACAGCTGCGCTGGGAAAGTAATATTGTCTACTGGATAAGTGAAAGCCCTTCTACTTCTAATCTCAGTGCTTTCCTTACCACCAGTGGAGCCCTGCAACTTCGAGACCAAAGTTTGAAGCCTGTTTGGTCTGTGTTTGGAGAAGACCACAATGATTCTGTGAACTACCGTTTTCTCAGGCTAGATGTGGACGGCAATCTACGCTTATATTCATGGATTGGAACTACACAATTATGGAGGCCTGTCTGGCAAGCTGTTGAGAATCAGTGCAAGGTCTTTGCAACCTGTGGCCAACGTGGTATCTGTGTCTTCACTGCCTCAGGTGCGGCTGATTGCAGGTGCCCATTTGAGGTGACTGAGACTGAAAATTGTTTGGTTCCATACGAGCAGGAGTGTGAATCTGGCACCAACATGGTAACATATGAAAAAACATTTCTATATGGAGTCTATCCCCCTCACGATTCAGTTACCATAAGTAGTTTGCATCAATGCGAGCAGTTGTGCCTGAATGACCCACAGTGTACAGTTGCAACCTCCTCCAACAACGGAAGTGCTCAGTGCTCCATAAAGAAGACCAAGTATGTCACTGGTTATGCAGATCCATCACTAAGCTCAATATCTTTTGTAAAGAGATGCTCAGGTCCTTTAGCTGTAAATCCCGGACTTACAAAATCACCTCCGCCCAAACAGACTCCAAGGCTTTGTCTTCCTTGTCTAATAGGAGCAGCCTCGGGCACATTTTTTGTCTTTGCTATCCTTCAGTTGGGAATTGTTTTCTGTGTCTACAGAAGAAAAAAATCTACAAGGAAAAAAGTCACTTTAGGGTTTATAAGCCCAAACTTGAAGGGTTTAATGGTTTTATCCTTCTCAGAAATCAAGAGCCTCACTGGGGATTTCAAGAACCAAATTGGTCCAAAGATGTTCAAGGGTGCGCTACCAAACAATCACCTGGTCGCAGTCAAAGACCTGAACGCATCCATAGAAGAGAGGAAGTTCCGGAGTGGTGTTGTAAAGATGGGGAGCATCCATCACAAGAACCTCGTGAAGCTGGAGGGCTATTGTTGTGAGTTTAATCATAGATTTTTGGTGTATGAATATGCCAAAAATGGTTCTTTGGATAAGTATATAGAGGATTCTACTCTGTGCAGGAAGCTAACATGGAGAAAGAGAGTAGAGATATGGTCAAGTGTGGCAAAGGCCATGTGTTATTTGCACACTGGGTGTAGGGAGTTTGTTAGCCATGGAAATTTGAAATGTGAAAATGTGGTATTGTATGAAAACTTAGAAGCCAAAGTGAATGAATATGGGTTTGCAAGAGTAGATGGGAAAGCATCATATTGTGGTTTTTCAGCTGAGAAAGATGTAGAGGATTACGGCAAGTTAGTATTGACGTTGTTGACTGGTTGTCGAGATCATGGGGAACTTTGTGAGTGGGCATATAGAGGATGGATGGAAAGGCGAGCACAGGATCTGGTTGATAAAAGAATTGACGGTGGAGTGGAATCAGAGGAGCTGGAACGTGCATTGAGAATTGCATTCTGGTGCCTTCAGATGGATGACCGTAGAAGGCCTTCTATGGGGGAAGTAGTAAGAGTACTAGAGGGGACATTGAATGTTGATGCCCCACCACATCCATTTGCGTTCCAGGGAGATGGTTCAGAATCACGAGTATAG 2658 0.4402 MRHGDGDVAWNNSTCGMGIGGSKAKEFIFWWIRLGQTNKGRGRDRTHELQLIRTHRDGSEQKLWMLVRGNENHHELSPGNFPELRKESFLWEPEIRYIRVANSPFSAPAFNCDAYDSCLWRLLEFLRFLTVLSDMHEQEDCLPRSPFLLCIFVGFLLNFIVIAEIPLGSKLFVVDNDCWVSSSGDFALGFFNISDQPNQYSIGIRFNSKSIPINQQTVVWVAGAQVTVGNRSYFHLTQEGELVLFDSVQGIPAWTSRTGNGSVVSAALHDNGNLVLQDREQNIIWQSFDTPSDTLLPGQSLSADQILRAASKNPMSSYYSLYMNALGQLQLRWESNIVYWISESPSTSNLSAFLTTSGALQLRDQSLKPVWSVFGEDHNDSVNYRFLRLDVDGNLRLYSWIGTTQLWRPVWQAVENQCKVFATCGQRGICVFTASGAADCRCPFEVTETENCLVPYEQECESGTNMVTYEKTFLYGVYPPHDSVTISSLHQCEQLCLNDPQCTVATSSNNGSAQCSIKKTKYVTGYADPSLSSISFVKRCSGPLAVNPGLTKSPPPKQTPRLCLPCLIGAASGTFFVFAILQLGIVFCVYRRKKSTRKKVTLGFISPNLKGLMVLSFSEIKSLTGDFKNQIGPKMFKGALPNNHLVAVKDLNASIEERKFRSGVVKMGSIHHKNLVKLEGYCCEFNHRFLVYEYAKNGSLDKYIEDSTLCRKLTWRKRVEIWSSVAKAMCYLHTGCREFVSHGNLKCENVVLYENLEAKVNEYGFARVDGKASYCGFSAEKDVEDYGKLVLTLLTGCRDHGELCEWAYRGWMERRAQDLVDKRIDGGVESEELERALRIAFWCLQMDDRRRPSMGEVVRVLEGTLNVDAPPHPFAFQGDGSESRV 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1336 885 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 695 773 - -
Glsi11g1336 885 CDD B_lectin 180 291 IPR001480 -
Glsi11g1336 885 Gene3D Transferase(Phosphotransferase) domain 1 695 775 - -
Glsi11g1336 885 Gene3D Transferase(Phosphotransferase) domain 1 776 872 - -
Glsi11g1336 885 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 161 290 - -
Glsi11g1336 885 Pfam Protein tyrosine and serine/threonine kinase 642 774 IPR001245 GO:0004672|GO:0006468
Glsi11g1336 885 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 774 869 - -
Glsi11g1336 885 SUPERFAMILY alpha-D-mannose-specific plant lectins 217 307 IPR036426 -
Glsi11g1336 885 ProSiteProfiles PAN/Apple domain profile. 460 540 IPR003609 -
Glsi11g1336 885 ProSiteProfiles Bulb-type lectin domain profile. 292 410 IPR001480 -
Glsi11g1336 885 SMART blect_4 170 291 IPR001480 -
Glsi11g1336 885 Pfam S-locus glycoprotein domain 379 442 IPR000858 GO:0048544
Glsi11g1336 885 PANTHER OS07G0415500 PROTEIN 149 875 - -
Glsi11g1336 885 Pfam D-mannose binding lectin 217 306 IPR001480 -
Glsi11g1336 885 SUPERFAMILY Protein kinase-like (PK-like) 616 862 IPR011009 -
Glsi11g1336 885 PIRSF SRK 141 884 IPR024171 GO:0004674
Glsi11g1336 885 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 591 694 - -
Glsi11g1336 885 SMART ntp_6 461 539 IPR003609 -
Glsi11g1336 885 ProSiteProfiles Bulb-type lectin domain profile. 164 289 IPR001480 -
Glsi11g1336 885 Gene3D Phosphorylase Kinase; domain 1 588 694 - -
Glsi11g1336 885 Gene3D - 164 289 IPR036426 -
Glsi11g1336 885 Gene3D - 290 414 IPR036426 -
Glsi11g1336 885 ProSiteProfiles Protein kinase domain profile. 575 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1336 885 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 291 409 - -
Glsi11g1336 885 SUPERFAMILY alpha-D-mannose-specific plant lectins 308 408 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1336 Glsi-ChrGlsi11 8389806 8396920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1336 579 882 Receptor kinase-like Gene Family AT3G45860 29.513 1.88e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Glsi11g1336 PK_Tyr_Ser-Thr 2.2e-18 CL0016