Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1335 ATGTGCTGTGAATTGGAGAGGTTAAAGCCATCGCCTTCTCCAACAATATCTTCTATTTCATTAAGTACCACTCAATCTAGAAACGGCAAGATGAATCACTTGACTGTTGAGACTGAAGATTGTTTTGCAAGCTTGCTTGAGCTCGCCGCCAATAATGATGTTGAGCGTTTCAAAATCTCAATTGAACGTAACCCTTTGTGTGTAGATGAGGTTGGCCTATGGTATGGTCGTCAAAAGGGATCAAAGCAGATGGTTAATGAGCACAGGACACCTTTGATGGTTGCTGCTACTTATGGTAACATTGATGTCATCAAATTGATTCTTTCACTATCTGATGCTGACATTAATCGACCATGCGGCCTTGACAAAAGCACTGCCCTTCATTGCGCGGCATCGGGTGGGGCTGTAAATTCTGTTGATGTTGTGAAACTGCTCCTAGCAGCAGGTGCGGACCCAAATTCTGTGGATGCCAATGGCTGTTGTCCAGTTGATGCCATTGTTGTACCTCCCAAGCTTGAATATGTCAAAAACATTCTTGAAGAACTTCTTCAAACTGATGGTTCCATGGCAAGATGTAATCTTAGGGTGATCACATCAAATACAAATTCTCCCCCTTTATCAACTTCTCCAGAGAATGGGTCTCCTGTTCCAGATTTCCAAATGAAGCTAAAGCTAGGTGATGACCCTATTTTTTCTGCATCTGAGAAGAAAGAATATCCAGTTGACCCATCTCTTCCTGACATCAAGAATAGCATATATTCAACTGATGAGTTCCGAATGTATTCCTTCAAGGTTCGACCTTGTTCACGAGCTTATTCACATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCCCGAAGAAGGGATCCAAGGAAGTTTCATTATAGCTGTGTTCCTTGTCCTGATTTTCGGAAAGGAGCTTGCCGGCGTGGAGATATGTGTGAATATGCTCATGGGGTTTTTGAGTGCTGGTTGCATCCAGCACAATATCGAACCCGCCTTTGCAAGGATGGGACTAATTGCTCAAGAAGAGTTTGCTTCTTTGCCCACACTGCAGAGGAACTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTTCCCTCACCACGCTCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAACCTGTTGCCTGGCTCCCCTTCTTCGATGTCTGTCATGTCTCCTTCACCATTCACTCCGCCAATGTCACCATCTGCCAATGGCATGTCTCACTCCTCTGTTGCTTGGCCCCAACCTAATGTCCCAACCCTGCATCTGCCAGGAAGTAATCTTCATTCCAGTCGATTGAGGTCTTCACTCAATGCTAGAGATATTCCTGTGGATGACTTTGACTTGTTGGCTGAATATGATGTTCAGCAACAGCAGCTACTTAATGAGTTGTCTTGCCTTTCCCAGCAACCTATGAATTCTAATTCTATAAACCGCTCTGGTCGTATGAAGACACTGACCCCTTCAAATCTTGACGATCTCTTTTCTGCTGAGAGCTCTTCTCCTCGGTTTGCAGATCCAACTTTGAGTTCTGCTGTTTTTTCTCCCACACACAAATCCGCTGTCCTTAATCAATTTCAGCAGCAGCAAAGCATGCTGTCTCCAGTGAACACAAATTTTTCTTCCAAGAATGTTGAGCATCCTTTATTACAGGCCTCTTTTGGGGTTCAGACATCAGGAAGGATGTCTCCACGAAACGTGGAACCTATCTCACCCATGAGCTCTAGGGTTTCTATGCTAGCTCAACGTGAGAAGCAGCAACAGTTTCGTAGCCTTAGCTCTCGGGAACTTGGCTCCAACTCTTCTGCTGCTGCTGCTGGTTTCTCCGTCAATTCTTGGTCAAAATGGGGATCTACTAACGGTAAATTGGATTGGGCTGTCAATGCAGACGAATTGGGTAAACTCCGTAGATCATCTTCATTTGAGTTTGGGAACAATGGTGAGGAGCCTGATTTATCATGGGTGCAGTCACTCGTGAAAGAATCTCCAACTGAGATTAAAGAGAAATTGGGACCAGCCATTTCAAGTGTTGCAGCGACTGGATCCTCCGGTGAAGGATCAAATTTGAGCAATCAAATTTGA 2109 0.4476 MCCELERLKPSPSPTISSISLSTTQSRNGKMNHLTVETEDCFASLLELAANNDVERFKISIERNPLCVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGNIDVIKLILSLSDADINRPCGLDKSTALHCAASGGAVNSVDVVKLLLAAGADPNSVDANGCCPVDAIVVPPKLEYVKNILEELLQTDGSMARCNLRVITSNTNSPPLSTSPENGSPVPDFQMKLKLGDDPIFSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMNLLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPTLHLPGSNLHSSRLRSSLNARDIPVDDFDLLAEYDVQQQQLLNELSCLSQQPMNSNSINRSGRMKTLTPSNLDDLFSAESSSPRFADPTLSSAVFSPTHKSAVLNQFQQQQSMLSPVNTNFSSKNVEHPLLQASFGVQTSGRMSPRNVEPISPMSSRVSMLAQREKQQQFRSLSSRELGSNSSAAAAGFSVNSWSKWGSTNGKLDWAVNADELGKLRRSSSFEFGNNGEEPDLSWVQSLVKESPTEIKEKLGPAISSVAATGSSGEGSNLSNQI 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1335 702 Coils Coil 459 479 - -
Glsi11g1335 702 PRINTS Ankyrin repeat signature 88 103 IPR002110 GO:0005515
Glsi11g1335 702 PRINTS Ankyrin repeat signature 141 155 IPR002110 GO:0005515
Glsi11g1335 702 ProSiteProfiles Ankyrin repeat region circular profile. 87 109 - -
Glsi11g1335 702 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Glsi11g1335 702 Gene3D - 299 360 - -
Glsi11g1335 702 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Glsi11g1335 702 MobiDBLite consensus disorder prediction 678 702 - -
Glsi11g1335 702 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
Glsi11g1335 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 322 IPR000571 GO:0046872
Glsi11g1335 702 PANTHER UNKEMPT FAMILY MEMBER 47 671 IPR045234 -
Glsi11g1335 702 SUPERFAMILY Ankyrin repeat 45 178 IPR036770 -
Glsi11g1335 702 Pfam Ankyrin repeats (3 copies) 82 156 IPR002110 GO:0005515
Glsi11g1335 702 ProSiteProfiles Ankyrin repeat profile. 87 109 IPR002110 GO:0005515
Glsi11g1335 702 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Glsi11g1335 702 Gene3D - 18 215 IPR036770 -
Glsi11g1335 702 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Glsi11g1335 702 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Glsi11g1335 702 MobiDBLite consensus disorder prediction 685 702 - -
Glsi11g1335 702 SMART ANK_2a 122 154 IPR002110 GO:0005515
Glsi11g1335 702 SMART ANK_2a 87 117 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1335 Glsi-ChrGlsi11 8380843 8382951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1335 15 671 C2H2 Transcription Factor Family AT5G12850 54.815 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi11g1335 Ank_2 1.6e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1335 11 8380843 8382951 Glsi11g1335 11 8380843 8382951 ECH