Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1334 ATGGACGACACATCTAAATCTGCGTCAATCACTCCATGGCATTGGGTCATTGAAGCCATAGCAGGTTGCGATAAAATAGACACATCTGCTTTACAGGATTTGATTGATGTAGCTCCAGTAGTGCCCAATGATTTGGGTAAAAACACAAGAGAATTGGTTGCTATGAGATGTTTGGAGTGCTTGTTTGGTTCTGCTAGTGGAATGAACTTTGATGCTTCTTCTAGCTTGGTTTCAAGAGTTGGGCTTGATTTTTCACAAAATTGTGAAGATGTCCTCCAACAAATATTACATGAGATACGATTGTCAAATCTGAAAATGGCGGGAGCAGAACTTATGAAATGGGATGTTTACCCATTTATTATACACAAAAGAGCTAGCACTATTAAATGTGAATTGGAGAAGCTGAAAGAATCGGTCTTTAAAGGTACTCATCCACATACTGATTACTTAAAAGAATGGAGGGAATGGCCACTTCAGAATGCAGATTACCAAGTGCTGGTGAATGATGGAAAATGCAATGATCGCCCTGAAAAGGATAATGAGAACTGCACTTATGCTGAAAGCATGGGATCAAAAGAGAACTCAATGTCTTTAATTTTGGAGAATGGGAATAAATCATCAAAAGAACATTTACACAATGAGAGTTGTTCGCCCTCTAAGAGAAATAGGTTTGACTCAGATGATGAGCATGTTATGGGATGCCTGCATGAGAAGCTAGTTGGTATAAATGAATGTGGTGATTTCCTAAGAAATGCTAAAAAGATGAAATGCGACGCACCCTTTAATATTGAGTCCAAGAAAGATAAGAGACTTTCTCAACATGGAAAGGATGTGTCAAGAAATTCAACTGAGAGACTTCCTCCAATATTTGAGAGAGAAGGACATCACATAGAAAAGGATCAATTGGCAACTTTGGGAGAAGGCTTGGTCTTTGAGAATTGTCATGATAGGTGTGCTGTTTCAAATTGCTGCAGAAGCGTCGGAGCTGATGAAGTCTGTAATGATCTTTCAGAAATTCCTTTTAACACTAGTATGATGCCACAGCATACATCTGGTGGTGAATCTTTTCAAAAGCATGTTGAATCAATTACATCGGATGTTGCACTCCCAAATGAAATTCAGCATAATATTTCTGCTGGTGAGCCCTGGTCTAAACATGAATCAGATTTACAACTGAAAGATCCAAAAGGCTCTCAGAAGACAGTTGCTAATGATGAAACTGGAGATGATACTGGTAATGATAATGAACATCATATTGAGCCTATTCCAACAAATATTGATGATCCAGATAAGATTCGACACAAGAATAACACATCTCAATCTAGAAAGGAAATATATTTTCAACTGAAGGAACCCAATCCTGCATCTCAAAATGGCTCTCGGCAGCTGGTTGCTAGTGATGAAGCTGTTGTTGATGCTGTTAATGGCAGTGGAGCAGAGCACAATGAAAGGATTAATATTGCAGCCGAAAAGCTTGAATTCTTTAGCTCTCAGTACACATCTATTCATGATTTCACAGCAAGTACTGAGTGGAGAGAGCAAAATCTTTGTATGAAGTGTAATGAAGGTGGTCCATTGCTTGTTTGTAAAACAACTACTTGCCCAATAAAGGTTCATGAAAGCTGTTTGGGTATGTTGGCCCGGTTTGATGCAAAGGGTAGCTTTTTATGCCCAATCTGTGTATATTCTCATGCTATTTCAGAATATCTTGAAGCTAAGAAAAAAGCTTCCTTGGCAAGGAAAGAACTATCTATCTTCTTTGGTTCAGATAGAGAGCATCAAGCCACAGAACTTCATGAAGTTCATACAAAAGAAAATAGTCTTTCAATGAAGAGCAAGTGTGAGCATATTCACGTAGAAGACAATGGAAATGACCAATCACCAGGGACAGGGAGAGAAGACAATACGGAAGATCATGTCGTTGAGCATGTAAATGAAGTCAATAATCTTCAGTTTGAAAGAAGTCAGCAACAAGCAGAGCCCTGTTTGCCAGGTGATAATATCCTCTCATCATGCAGAGAAAAAGAAATTGTAAATAATATGATAGAAAAGGTCTTAATTGGAGAAGAAGAAAGGGGTGAAATGATGAATCCCGAGAGTTCAACTGTTAGAGAACCTGGAGAAAACCAAGTGCCAGCTAACCATGTAACTGTCAGTGATAAATTGTTTTGTCAAGAAGCAAATTTTCTGTGTGTTAATCAGATCAATACAGGAGAAAAAATTCAGCTGGAAATGCTAGAACAACGCAATACTAATCAAACAGGAGAACCTGTTTGTGCACGTGGTACTGAAGGAGAGAACATTTATGAAGATAAATATAAAAATCGTATCAGTTCTAAATATTCCATGAGATCCAGAAAGTGTGAAACACAGTACAAACCCCAAGCAATCCCTCAGTTAAGACGTAATAAAATTTCATGGACAGCTGAGGAGGAAGAAATGCTAAGGGAGGGCATGCAGAAGTTTGGGGTAAGTGACCATAAAATCCCATGGAAGCAAATTTTGGAGTTTGGTTCTCATGTGTTTCTGAAGGAACGGAGAGCAATAGACCTGAAGGATAAATGGAAGAACATGTGCAAGGCAAGCTCAAAACTAAATTGA 2601 0.3852 MDDTSKSASITPWHWVIEAIAGCDKIDTSALQDLIDVAPVVPNDLGKNTRELVAMRCLECLFGSASGMNFDASSSLVSRVGLDFSQNCEDVLQQILHEIRLSNLKMAGAELMKWDVYPFIIHKRASTIKCELEKLKESVFKGTHPHTDYLKEWREWPLQNADYQVLVNDGKCNDRPEKDNENCTYAESMGSKENSMSLILENGNKSSKEHLHNESCSPSKRNRFDSDDEHVMGCLHEKLVGINECGDFLRNAKKMKCDAPFNIESKKDKRLSQHGKDVSRNSTERLPPIFEREGHHIEKDQLATLGEGLVFENCHDRCAVSNCCRSVGADEVCNDLSEIPFNTSMMPQHTSGGESFQKHVESITSDVALPNEIQHNISAGEPWSKHESDLQLKDPKGSQKTVANDETGDDTGNDNEHHIEPIPTNIDDPDKIRHKNNTSQSRKEIYFQLKEPNPASQNGSRQLVASDEAVVDAVNGSGAEHNERINIAAEKLEFFSSQYTSIHDFTASTEWREQNLCMKCNEGGPLLVCKTTTCPIKVHESCLGMLARFDAKGSFLCPICVYSHAISEYLEAKKKASLARKELSIFFGSDREHQATELHEVHTKENSLSMKSKCEHIHVEDNGNDQSPGTGREDNTEDHVVEHVNEVNNLQFERSQQQAEPCLPGDNILSSCREKEIVNNMIEKVLIGEEERGEMMNPESSTVREPGENQVPANHVTVSDKLFCQEANFLCVNQINTGEKIQLEMLEQRNTNQTGEPVCARGTEGENIYEDKYKNRISSKYSMRSRKCETQYKPQAIPQLRRNKISWTAEEEEMLREGMQKFGVSDHKIPWKQILEFGSHVFLKERRAIDLKDKWKNMCKASSKLN 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1334 866 CDD SANT_TRF 807 860 - -
Glsi11g1334 866 SMART sant 803 861 IPR001005 -
Glsi11g1334 866 SUPERFAMILY FYVE/PHD zinc finger 506 564 IPR011011 -
Glsi11g1334 866 ProSiteProfiles Zinc finger PHD-type profile. 514 563 IPR019787 -
Glsi11g1334 866 MobiDBLite consensus disorder prediction 378 440 - -
Glsi11g1334 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 622 IPR013083 -
Glsi11g1334 866 Gene3D - 807 866 - -
Glsi11g1334 866 MobiDBLite consensus disorder prediction 410 440 - -
Glsi11g1334 866 SUPERFAMILY Homeodomain-like 801 860 IPR009057 -
Glsi11g1334 866 ProSiteProfiles Myb-like domain profile. 799 859 IPR001005 -
Glsi11g1334 866 Pfam Myb-like DNA-binding domain 807 862 - -
Glsi11g1334 866 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 12 862 - -
Glsi11g1334 866 SMART PHD_3 516 561 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1334 Glsi-ChrGlsi11 8369951 8373644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1334 804 858 Single Myb Histone (SMH) Gene Family AT1G72740 46.552 4.08e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1334 11 8369951 8373644 Glsi11g1334 11 8369951 8373644 ECH