Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1331 ATGGGATCTTTCTCTTCAATTTTGCAGTGGCTATCTGTGCTAGAAATGCTGATTGCTTGTAATGTTTTGTTCTCATTAGCCACCCGCCAATCAGATTGCAGAACTGCAGCAACAGTGACAATGGAGAGGGGAAACACTAAGAAGAGAGCATCGGTTCTCTCTTTGGAGCAATTCATCTCAATTATGGCCCCTCTTATTGATTTGGAAAAGGAAGCTGAGATATCAAGCTCAATCACATCAGGCGCGTCGAGAAATTTGGATACTGCTCAAAAAAGGGGCTCGACAATCCTCAATTTGAAGTGTGTTGATGTCCAGACAGGGCTCATGGGGAAATCTCTTATCGAGTTCCAGTCTACCAAAGGAGATGTTCTTCCTGCACACAGGTTTAGTACACATGATGTTGTGGTTTTAAAACTAAGCAAGGCTGATTTAGGGTCCCCTGCTCTTGGACAAGGCGTGGTTTATCGGTTAAAGGACTCATCAATAACGGTTGCTTTTGACGATATACCAGAAGATGGTTTAAATAGTCCCCTAAGGCTTGAGAAACTGGCCAATGAGGTGACCTATCGTAGGATGAAGGATGCATTAATACAGTTGAGTAAAGGAGTGCATAAGGGTCCTGCTGCTGATCTAATTCCTGTCTTGTTTGGAGAGAGGTTACCAACAGTGTCCAAGAAGGATGTCCCATTCACTCCATTTAACCCCAACCTTGATCACTCTCAGAAAGATGCAATCTCAAAGGCCCTATCGTCAAAGAGTGTATTTTTGCTGCATGGACCTCCTGGGACGGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTGAAGCGTGGATCAAAGGTTCTAGCTTGTGCTGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGACTAGTTCCACGTAGAGTTAAACTGGTGAGATTGGGTCATCCTGCACGTTTATTGCCTCAAGTCCTCGACAGTGCGTTGGATGCTCAGGTACTTCGAGGAGATAATAGTGCACTTGCAAATGACATTCGGAAGGAAATGAAGGCATTAAATGGAAAGTTGCTGAAAACCAAAGACCGGAATACAAGGAGGGACATTCAGAAGGAACTTAGGAATCTGTCCAGAGAAGAACGCAAAAGGCAGCGGCTTGCTGTAACAGACGTAATTAAAAGTGCAGATGTGGTATTAACCACTTTGATTGGGGCTTTTTCTAAGAAGCTGGATAATACTTCATTTGACTTGGTGATTATTGATGAAGCAGCCCAAGCACTTGAGATAGCATGCTGGATACCTCTACTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTCCCGCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGATTGGGAAGAACCCTCTTTGAACGACTTGCTGAAATGTATGGAGATGAAGTCACATCTATGTTAACTGTCCAATACCGTATGCATGAATTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGCAAGGTCAAAGCTCATCCAAGTGTTGCTGCACATATGCTGTATGATCTTGAGGATGTGAAGAGGACCTCTTCAACTGAACCAACCCTTCTTCTCATAGACATAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCCTCAATGAAGGTGAAGCTGAAGTTGCCATGGCACATGCAAAGAGACTTGTGCAGAGTGGTGTTCTGCCTTCTGATATTGGAATTATTACCCCATATGCTGCACAGGTCGTTTTACTCAAGATGTTGAAAAACAAGGAGGGCTCGCTGAAGGATGTTGAAATCTCAACAGTTGATGGCTTTCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAGCAAGAGGTGGGCTTTCTGAGTGATCGCCGCAGAATGAATGTGGCTGTGACCCGAGCAAGGAGGCAGTGCTGTATTGTCTGTGACACAGAGACAGTTAGTAGTGATGGATTCCTAAAGCGATTGATTGAGTATTTTGAAGAGCATGGTGAGTATCAGAGCGCATCTGAGTATCAGAATGAATAG 2064 0.4346 MGSFSSILQWLSVLEMLIACNVLFSLATRQSDCRTAATVTMERGNTKKRASVLSLEQFISIMAPLIDLEKEAEISSSITSGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHRFSTHDVVVLKLSKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKLANEVTYRRMKDALIQLSKGVHKGPAADLIPVLFGERLPTVSKKDVPFTPFNPNLDHSQKDAISKALSSKSVFLLHGPPGTGKTTTVVEIILQEVKRGSKVLACAASNIAVDNIVERLVPRRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSALANDIRKEMKALNGKLLKTKDRNTRRDIQKELRNLSREERKRQRLAVTDVIKSADVVLTTLIGAFSKKLDNTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEVTSMLTVQYRMHEFIMDWSSKELYNSKVKAHPSVAAHMLYDLEDVKRTSSTEPTLLLIDIAGCDMEEKKDEEDSTLNEGEAEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEGSLKDVEISTVDGFQGREKEAIIISMVRSNSKQEVGFLSDRRRMNVAVTRARRQCCIVCDTETVSSDGFLKRLIEYFEEHGEYQSASEYQNE 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1331 687 Gene3D - 81 183 - -
Glsi11g1331 687 CDD SF1_C_Upf1 485 673 IPR047187 -
Glsi11g1331 687 SMART AAA_5 251 469 IPR003593 GO:0016887
Glsi11g1331 687 FunFam P-loop containing nucleoside triphosphate hydrolase 483 687 - -
Glsi11g1331 687 CDD DEXXQc_SMUBP2 236 484 - -
Glsi11g1331 687 Gene3D - 483 687 IPR027417 -
Glsi11g1331 687 Pfam AAA domain 460 656 IPR041679 -
Glsi11g1331 687 NCBIfam IGHMBP2 family helicase 385 682 IPR004483 GO:0003677|GO:0005524
Glsi11g1331 687 Coils Coil 338 374 - -
Glsi11g1331 687 SMART ultradead3 233 488 IPR014001 -
Glsi11g1331 687 FunFam DNA-binding protein SMUBP-2 81 183 - -
Glsi11g1331 687 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 46 686 - -
Glsi11g1331 687 Gene3D - 64 467 IPR027417 -
Glsi11g1331 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 673 IPR027417 -
Glsi11g1331 687 Pfam AAA domain 237 451 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1331 Glsi-ChrGlsi11 8357070 8366241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1331 236 420 Core DNA Replication Machinery Family AT1G08840 28.649 4.12e-11 64.7