Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1324 ATGACAAGGCATGGTGCTCGAAAGAGGCTACCCAGAGACAAGAATAAAGGTATGCTATTGAAAACTCTGGCAACTTTGTACCCTCGAAGGATAACCAGAATGCGTACGACTAAAACTAGAGCTAGACAAAACATTAGACGCTGTTTTGGTCATGAAAATTCTAGAGAATTTGAATCCATGACTCCAGACAAGAAGTCCAGCGAAAGCCAAAGTGAAGAAAGCAATAAAGATTTGAATTTCCTTGCTTCTTCCTTGTTTAGCTCAACTGCGCCGTGTATCGAAGATTTTGAAATTCCAGGAGCCATTCCTGACATTGAATCCTTGAATTCTGATACCAAGTTATTTGAAGGAAAATTGAGAAAGCAGAAGAAAGTGGTCCTGAATGTTGAGATGAGCTTCTATTCTACAATGGATAAGAAAAGCCTAGATTTATGGGGGCTGGTGCCGGAGCCGGAGGATGCAAACGCAAAGAAGGCTAAAAGTTTAAGTTTTTTCAAATTCAATCCCATCCACCATTATTACCCACCTTCAAACCCTTCTCCACACCATCCCTATGTCCACAACTTCATCAACCAAAACATCAGCTGCCAATCCACCACCACCAGTCACCACCACCAAAGTGCTCCTTCACCCCCTTCCCCTCCTCTCAGAGAAGCCCTTCCTCTTCTGAGCCTGAGCCCAACAAAGCAAGAACAAGATGAACACCAGTCTTGCACTGCTATGGATGTGGAGGACAGAATCCTGCACAGTAACCCCAAAGAAGAAGTTGAGGAGGATGACAGTGTGACTGTTGCACTCCACATAGGATTGCCAAGCCCTAGTGCTGCTGAAATGGCCTCTTTAATCTCTTCTTCCACTGAGAGAGAACAAGGAGATGCTGAGGATTCTGGGTTCACGGTCAACGGGCGCAACAAGGGTCAGTATTGGATCCCTACCCCTTCTCAGATTCTCATAGGTCCTACTCAGTTCTCTTGCCCTGTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACGGGCATGCTCAGGCTTCCTTGCTATTGTTGTGCCCCGGGGTGCAGGAACAACATTGATCACCCAAGGGCAAGGCCCCTCAAAGATTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGAATTAAGCCCTTCATGTGCAGAAAATGTGGCAAAGCTTTCGCCGTGAGGGGGGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTATTGTATCTGTGGCTCTGATTTCAAGCACAAGAGGTCGCTTAAAGATCATGTCAAAGCTTTTGGGAGTGGCCATGCGGCTTATGGGGTTGATGGCTTCGAAGAAGAAGATGAACCAGCATCCGAAGTAGAGCAAGATAACGAGTCCACCCAGTGA 1455 0.4612 MTRHGARKRLPRDKNKGMLLKTLATLYPRRITRMRTTKTRARQNIRRCFGHENSREFESMTPDKKSSESQSEESNKDLNFLASSLFSSTAPCIEDFEIPGAIPDIESLNSDTKLFEGKLRKQKKVVLNVEMSFYSTMDKKSLDLWGLVPEPEDANAKKAKSLSFFKFNPIHHYYPPSNPSPHHPYVHNFINQNISCQSTTTSHHHQSAPSPPSPPLREALPLLSLSPTKQEQDEHQSCTAMDVEDRILHSNPKEEVEEDDSVTVALHIGLPSPSAAEMASLISSSTEREQGDAEDSGFTVNGRNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRARPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGSGHAAYGVDGFEEEDEPASEVEQDNESTQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1324 484 SMART c2h2final6 323 345 IPR013087 -
Glsi11g1324 484 SMART c2h2final6 407 427 IPR013087 -
Glsi11g1324 484 MobiDBLite consensus disorder prediction 46 72 - -
Glsi11g1324 484 SUPERFAMILY beta-beta-alpha zinc fingers 392 427 IPR036236 -
Glsi11g1324 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 323 350 IPR013087 -
Glsi11g1324 484 PANTHER ZINC FINGER PROTEIN WIP2 191 481 IPR043584 GO:0003700|GO:0010468
Glsi11g1324 484 MobiDBLite consensus disorder prediction 198 220 - -
Glsi11g1324 484 FunFam Zinc finger protein WIP2 376 458 - -
Glsi11g1324 484 FunFam zinc finger protein WIP2-like 322 345 - -
Glsi11g1324 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 407 427 IPR013087 -
Glsi11g1324 484 MobiDBLite consensus disorder prediction 46 74 - -
Glsi11g1324 484 Gene3D Classic Zinc Finger 322 345 - -
Glsi11g1324 484 ProSitePatterns Zinc finger C2H2 type domain signature. 325 345 IPR013087 -
Glsi11g1324 484 Gene3D Classic Zinc Finger 385 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1324 Glsi-ChrGlsi11 8318119 8326579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1324 164 484 C2H2 Transcription Factor Family AT3G57670 61.186 3.87e-142 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g1324 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2378 02 74048655 74051785 Glsi11g1324 11 8318119 8326579 CCT
Glsi11g1324 11 8318119 8326579 Glsi11g1324 11 8318119 8326579 ECH