Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1322 ATGGAGATCGATAATGGCGACACCAAGTCGAAGATGGAAGACTATGAAGTGGTAGAGCAAATTGGCAGAGGAGCATTCGGCGCCGCTTTTCTCGTTCTCCACAAGTCTGAGAAAAAAAAGTATGTGCTGAAGAAGATTCGCTTAACCAAGCAAACCGAGAAGTTCAAACGTACAGCACACCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATCGTGGAGTACAAAGATGCTTGGGTAGAGAAGGCGGACTATATATGCATTATAACTGGCTACTGTGAAGGAGGTGACATGGCCGAGAACATAAAGAAAGCTCGGGGATCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAATTACTGCTAGCTGTGGACTACCTGCACTCTAATCGTGTACTCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAAGGATATTCGTCTTGGTGACTTTGGTCTGGCAAAGCTGCTTAGTACAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAACTACATGTGTCCTGAGCTACTTGCAGATATACCTTATGGTTATAAATCTGATATATGGTCACTTGCTTGCTGCATGTTTGAAATTGCTGCACATCAACCGGCATTTCGTGCTCCGGACATGGCTGGACTTATCAATAAAATAAATAGATCCTCCATTTCTCCACTGCCAATTGTTTATTCTTCCACCCTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCTGAACATAGACCAACAGCGGCTGAATTGTTAAGACATCCTCATTTACAACCATATGTTCTCCGCTGTCGTAATGCAGCATCTGTTTTTCTTCCAATATTTCCTCTAACTAACTCAAAGGATAAAACAAAACGGTCTTACAAATCTGGTGGCAGCAAAGACCATAAGGATAAAGCAGTGGGATTAGGAAATCGTTTGGAAAGGATTCATCAATTTGAGGTAAATGGAGAGGTACAGCCAAGCAATCTGCCAAATAATGGTAAGCTAATAGTCTCAAACAATGCAGAAGACAACCTTCAAACCAAAATGGTTGATCATACCAGCTATGTAGTGGAATCATCTACTAGTATCAGTGGATCGAAGGATGGGTCAACAACATCTGAATCAACCATTTGCAGTGTGTGCAAGGAAGCAGACTATAAAAGTAGACCTGCAAGGGAAACAGCTGACAATGAGATTACATCAAACAGTACACCAGATCCTGAGGATGAAGAACAAAGATTTGCTCCTGAACATGATCAAAAATCAGAAGGGGTTGACATAATAGCAGTGACCCCGAAAGTTGAAGATGCTTTCCCCAACGGAGATTTGGACAAAGCTGAAGCACAGAGAGAAGATGTCGGACCTGAGGACTCCAGGAAATCAATAACGTCCAGTGCAAACAGCACTGATAAAGATGGGTCCCTTGATGAGGAAAGGTCATCACCAACTACGCAACCTGTTAAGGTTGAACACGACTCTGAATCTGGAAGCTGCCTACAGAAAAGGGAAATTCCTGATTCATTTGCAGAAGGCTTGCACACGGAGTGCTTGTCGTCTGAGAGTAATGATACACTTCCAGGTAAGGAAAAAAGCAGAGCAAAAACACATAACTTCAGTTGCTCGGCACATAAAGAGAATGGCAGTGCTTGTGTGGTTGATCAGACACCAAGTGACATTTCATTAGGTACAATTACTGCAACGGTTGGTGATGAAACCAAGAGTGTGTTGGATGATCCCTGCCAGGAAAGAGCCGATGCTCTGGAGTCTCTGCTTGAGCTATGTGCTGAGCTACTTAAGCAAGACAAACTTGAAGAGCTTGCGGGTGTGCTGAGACCATTTGGGCAAGAAACTGTGTCTTCCAGAGAAACAGCGATATGGTTGACAAAGAGCCTTATGTCCGCTCAAAAATTTAATACAGAAACCTAG 1947 0.4309 MEIDNGDTKSKMEDYEVVEQIGRGAFGAAFLVLHKSEKKKYVLKKIRLTKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKADYICIITGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKDKDIRLGDFGLAKLLSTEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLACCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPHLQPYVLRCRNAASVFLPIFPLTNSKDKTKRSYKSGGSKDHKDKAVGLGNRLERIHQFEVNGEVQPSNLPNNGKLIVSNNAEDNLQTKMVDHTSYVVESSTSISGSKDGSTTSESTICSVCKEADYKSRPARETADNEITSNSTPDPEDEEQRFAPEHDQKSEGVDIIAVTPKVEDAFPNGDLDKAEAQREDVGPEDSRKSITSSANSTDKDGSLDEERSSPTTQPVKVEHDSESGSCLQKREIPDSFAEGLHTECLSSESNDTLPGKEKSRAKTHNFSCSAHKENGSACVVDQTPSDISLGTITATVGDETKSVLDDPCQERADALESLLELCAELLKQDKLEELAGVLRPFGQETVSSRETAIWLTKSLMSAQKFNTET 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1322 648 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Glsi11g1322 648 MobiDBLite consensus disorder prediction 445 465 - -
Glsi11g1322 648 CDD STKc_Nek 14 269 - -
Glsi11g1322 648 SUPERFAMILY Protein kinase-like (PK-like) 12 300 IPR011009 -
Glsi11g1322 648 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Glsi11g1322 648 MobiDBLite consensus disorder prediction 394 507 - -
Glsi11g1322 648 MobiDBLite consensus disorder prediction 413 431 - -
Glsi11g1322 648 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1322 648 Gene3D Transferase(Phosphotransferase) domain 1 95 281 - -
Glsi11g1322 648 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 550 - -
Glsi11g1322 648 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Glsi11g1322 648 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
Glsi11g1322 648 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1322 648 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1322 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1322 Glsi-ChrGlsi11 8304691 8309393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1322 21 300 MAP Kinase Kinase Kinase AT1G53570 31.228 3.36e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Glsi11g1322 Pkinase 4.2e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2382 02 74068424 74073969 Glsi11g1322 11 8304691 8309393 CCT
Glsi11g1322 11 8304691 8309393 Glsi11g1322 11 8304691 8309393 ECH