Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1319 ATGGCTACATTCTGTATATACCTGTTCCTTCTCTCTCTAACCTTTACAGTTTTCAATCTTAGTTCATCTTCGTCAGAGGCGGATATTCTTCTCTCCTTCAAGGCCTCCATTGAAGACTCTAGGAAGGCTCTGTCAAGCTGGTCCAATACTTCAGCGACCCACTACTGCAACTGGACTGGAGTCGCCTGCTTCACCGCACCTTCTCTCTCTGTAACTTCTATCAATCTTCAGGGCTTAAACCTTTCTGGGGATATCTCATCTTCAATATGTGACCTTCCAAATCTCTCCCACCTCAACCTTGCTGACAATCTATTCAACCAGCCCATTCCTCTTCATCTTTCTCAGTGTAGTTCGTTGGAAACTTTGAATCTCAGTAACAATCTTATCTGGGGAACGATCCCGTTGCAGATTTCTCAGTTTGGTTCCTTGAGAGTGCTTGATTTCAGCAGAAACCATATAGAAGGAAATATCCCAGAAAGCTTAGGCACACTGAAGAACCTCGAAGTCCTTAACGTGGGAAGTAACCTCCTATCAGGTAGTGTACCTACTATCTTCAGGAATTTCACTAAGCTTGCTGTTCTTAATTTGTCTCAAAATCCATACTTGGTAAGTGAGATTCCGGAGGATATTGGCGAACTTGGAAGTCTCAAGCAACTTCTGTTGCAGAACTCTGGTTTTCTAGGTGAAATTCCAGATTCTTTTGTGGGCCTGCGTAGTTTGACCCATTTAGACCTCTCTGAGAACCATCTAACCGGTAAGATTCCTCAGGCTCTGGGGTCTTCTCTCAACAACCTGGTATCTTTTGATGTTTCACAGAATAAGCTTTTGGGGTCATTTCCAAACGGCATTTGTAAAGGAAAAGGCCTGATAAATCTCAGTCTCCACACAAATATCCTCACCGGTTCAATACCAAACTCCATTAGTGAATGTAAGAATCTTGAGAGATTTCAAGTTCAGAACAATGGGTTTTCTGGAGATTTCTCTTATTCTTTATGGTCGTTACCCAAAATTAAGCTGATTAGAGCTGAAAACAATAGATTCTCAGGACAAATATCCGAATCGATATCAGGAGCTGTACAGTTGGAGCAAGTTCAGCTTGACAATAACAGCTTTACCGGTAAAATTCCTCATAGTCTTGGGTTGGTCAATAGCTTATACAGATTCTCCGCGTCTCTTAATCGTTTCTATGGAGAACTTCCTATAAATTTTTGTGATTCCCCTGTTATGAGCATTGTGAATCTCTCTCACAATTCCCTTTCCGGTCAAATCCCAGAGCTGAAAAAATGCCGGAAACTAGTTTCATTGTCTTTAGCGAACAACAGTCTTACTGGTCAAATACCTCCTTCCCTTGCTGAGTTACCAGTGCTAACTTACCTTGATCTTTCAGCTAACAATCTCACTGGTTCAATACCGCAGGGGCTTCAAAATTTGAAGCTTGCTCTTTTCAATGTGTCCTTCAATCAGCTATCTGGTAAAGTACCATACTCCTTGATATCTGGTCTTCCTGCCTCATTTTTGGAAGGAAACCCTGAACTTTGTGGCCCTGGATTACCCGCTTCCTGTTCTGATGACCCGCCAAGACACCATGCCGTTGGTCTCACCACGTTGGCATGTGCTCTAATCTCTGTAGCCTTCGTTGTTGGAACTGCGATTGTTGCTGGTGGATTTATATTGTATCGGAAGTCTTGCAAGCCAAATCAAATAGGAGTTTGGCGCTCAGTGTTCTTCTATCCTCTTAGAATTACTGAGCATGATTTGCTTATAGGCATGGATGAGAAAAGCTTAATTGGAAATGGAGTTTTTGGCAGAGTTTATGTTGTAAGTTTACCAAGTGGTGAACAAGTCGCTGTGAAGAAGCTTGTCAATTTTGGGGACCAGACTTCAAAAAGCTTGAAAGCTGAGGTGAAGACGTTGGCGAAAATTAGGCATAAAAATGTCGTTAAAATTCTGGGATTTTGCCATTCTGATGAGTCAATTTTTCTCATTTATGAGTACTTACAAGAAGGAAGCTTGGGGAAGTTGATTTCCCGTCAAAATTTTCAGTTGCAGTGGGAAGCAAGATTGAGAATTGCCATCAGGGTTGCTCAAGGACTAGCATATCTTCACAATGATTATGTTCCTCACTTGCTTCACAGAAATGTCAAGTCAAACAACATTCTGCTGGATGCAGACTTTGAGCCAAAACTCACAGATTTTGCTCTTGATCGAATTGTGGGAGAAGCTGCATTTCAGTCAACTTTTGCTTCTGAAGCATCATCTTCCTGTTACAATGCTCCAGAATATGGGTACAGTAAGAAAGCAACCGAACATTCGGACATCTACGGCTTTGGGGTTGTATTGCTAGAGCTAGTGAGTGGGAGGCAGGCAGAACAATTAGTATCAACGGACTCCCTTGACATAGTGAAGTGGGTTAGAAGGAGAGTGAACATCACTAACGGGTTACATCAGGTACTTGACTCCAAAATATCACATTCTTATGAGCAAGAGATGATTGGAGCTCTAGAAATTGCTCTTCGTTGCACTTCTGTGGTGCCTGAAAAAAGACCACCAATGGTAGAAGTTGTGAGAGCTCTTCAGTCCCTTGAGTCAGGAAGCGGCATTGCAAATTTACAGGAACCAAATGAGGAACACTCGGTTCCAATCTGA 2646 0.4229 MATFCIYLFLLSLTFTVFNLSSSSSEADILLSFKASIEDSRKALSSWSNTSATHYCNWTGVACFTAPSLSVTSINLQGLNLSGDISSSICDLPNLSHLNLADNLFNQPIPLHLSQCSSLETLNLSNNLIWGTIPLQISQFGSLRVLDFSRNHIEGNIPESLGTLKNLEVLNVGSNLLSGSVPTIFRNFTKLAVLNLSQNPYLVSEIPEDIGELGSLKQLLLQNSGFLGEIPDSFVGLRSLTHLDLSENHLTGKIPQALGSSLNNLVSFDVSQNKLLGSFPNGICKGKGLINLSLHTNILTGSIPNSISECKNLERFQVQNNGFSGDFSYSLWSLPKIKLIRAENNRFSGQISESISGAVQLEQVQLDNNSFTGKIPHSLGLVNSLYRFSASLNRFYGELPINFCDSPVMSIVNLSHNSLSGQIPELKKCRKLVSLSLANNSLTGQIPPSLAELPVLTYLDLSANNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPELCGPGLPASCSDDPPRHHAVGLTTLACALISVAFVVGTAIVAGGFILYRKSCKPNQIGVWRSVFFYPLRITEHDLLIGMDEKSLIGNGVFGRVYVVSLPSGEQVAVKKLVNFGDQTSKSLKAEVKTLAKIRHKNVVKILGFCHSDESIFLIYEYLQEGSLGKLISRQNFQLQWEARLRIAIRVAQGLAYLHNDYVPHLLHRNVKSNNILLDADFEPKLTDFALDRIVGEAAFQSTFASEASSSCYNAPEYGYSKKATEHSDIYGFGVVLLELVSGRQAEQLVSTDSLDIVKWVRRRVNITNGLHQVLDSKISHSYEQEMIGALEIALRCTSVVPEKRPPMVEVVRALQSLESGSGIANLQEPNEEHSVPI 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1319 881 SUPERFAMILY L domain-like 23 285 - -
Glsi11g1319 881 PRINTS Leucine-rich repeat signature 240 253 - -
Glsi11g1319 881 PRINTS Leucine-rich repeat signature 453 466 - -
Glsi11g1319 881 Pfam Protein tyrosine and serine/threonine kinase 594 858 IPR001245 GO:0004672|GO:0006468
Glsi11g1319 881 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Glsi11g1319 881 ProSitePatterns Protein kinases ATP-binding region signature. 596 619 IPR017441 GO:0005524
Glsi11g1319 881 SUPERFAMILY L domain-like 204 518 - -
Glsi11g1319 881 Pfam Leucine rich repeat 142 200 IPR001611 GO:0005515
Glsi11g1319 881 Pfam Leucine rich repeat 215 275 IPR001611 GO:0005515
Glsi11g1319 881 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 666 865 - -
Glsi11g1319 881 Gene3D Transferase(Phosphotransferase) domain 1 666 876 - -
Glsi11g1319 881 Gene3D Ribonuclease Inhibitor 262 529 IPR032675 -
Glsi11g1319 881 Gene3D Ribonuclease Inhibitor 185 261 IPR032675 -
Glsi11g1319 881 Gene3D Ribonuclease Inhibitor 23 184 IPR032675 -
Glsi11g1319 881 ProSiteProfiles Protein kinase domain profile. 590 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1319 881 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 581 665 - -
Glsi11g1319 881 SUPERFAMILY Protein kinase-like (PK-like) 591 858 IPR011009 -
Glsi11g1319 881 SMART LRR_typ_2 164 187 IPR003591 -
Glsi11g1319 881 SMART LRR_typ_2 92 116 IPR003591 -
Glsi11g1319 881 SMART LRR_typ_2 237 261 IPR003591 -
Glsi11g1319 881 SMART LRR_typ_2 188 213 IPR003591 -
Glsi11g1319 881 SMART LRR_typ_2 262 286 IPR003591 -
Glsi11g1319 881 SMART LRR_typ_2 117 140 IPR003591 -
Glsi11g1319 881 SMART LRR_typ_2 453 476 IPR003591 -
Glsi11g1319 881 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 277 860 - -
Glsi11g1319 881 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 260 524 - -
Glsi11g1319 881 FunFam Leucine-rich repeat family protein 25 182 - -
Glsi11g1319 881 Gene3D Phosphorylase Kinase; domain 1 585 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1319 Glsi-ChrGlsi11 8277101 8279975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1319 30 861 Receptor kinase-like Gene Family AT5G06940 63.919 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi11g1319 PK_Tyr_Ser-Thr 9.1e-40 CL0016