Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1314 ATGGAGCAAACTACAGGAGGCTTGCCCGGATCCAGTCTTTCTGTTCGCGAACACGATAAGACCGTACTCGAATCCATTCAATTCAGCCAAGAAATACAGGGAATCATAGCCCCGGCTGCTGAAAACGCGAGCTCCTTCACCGCACTTCTCGAACTGCCACCAACGCAAGCCATGGAGCTCCTTCACACTCCGGACTGTGACGGAACCGCCGCTGCTAGCAGCGTCTCCGGGAAATCCTTATGCCAAATCAACAATCAGAAACCCTATCTATTCCACTCTTTCAGTGGCAATTTAACTTTTCCTTGTAACGCTGCTTTGATCGAGCGCGCCGCCAAGTTCTCCATATTTGCCGGAGAAAACTCGCCGCCGGAGGATTCCAGCTTAGTTGCTCCTATTTCAGGTGCAAATTTGGATAAAGTGAAGAATGAACCCCCAGAAACTGATTCGAATCCTAGTTCAATGCAGGGGTGCGTTTCTGATCCCGCCGTTGAAAACAAGAACCAGCGGCCGCCAAAGAGGAAGGAACGAGAGAAGAAGGGTAAAGGGTTTCCAAAGAAGAGTAAGAGCGTCGCCGACGAGACCTCCGGGGATGCTGAAAAACGTCCCTACGTTCATGTCCGAGCTCGTCGAGGTCAAGCTACAGACAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGAATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGCAATAAGATATCAGGAACAGCGTTAGTTCTGGATGAAATCATCAGCCATGTGCAATCTCTGCAACGTCAAGTGGAGTTCTTATCAATGAAACTGGCTGCAGTTAATCCAAGAATTGATTTCAGCCTTGACAGCATATTGGCTACAGAAGGTGCATCTCTCATGGACAGTAACTTCCCCAGCATGGCTGCACCTCTAATGTGGCCAGAAATCCCAGCCAGTGGAAACAGACAGCAATATCAACAACAGTGGCAAATTGATGCATTCCCCCAACCACTTTGGGGGAGGGAAGAAGGGAACCATAATTTTATTACTCCAGAAAACTCACTTTTGAGTTATGACTCGTCAGCAAATACAGCATCTCTGCACTCAAATCAGTTGAAGATGGAGCTCTGA 1119 0.4853 MEQTTGGLPGSSLSVREHDKTVLESIQFSQEIQGIIAPAAENASSFTALLELPPTQAMELLHTPDCDGTAAASSVSGKSLCQINNQKPYLFHSFSGNLTFPCNAALIERAAKFSIFAGENSPPEDSSLVAPISGANLDKVKNEPPETDSNPSSMQGCVSDPAVENKNQRPPKRKEREKKGKGFPKKSKSVADETSGDAEKRPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIISHVQSLQRQVEFLSMKLAAVNPRIDFSLDSILATEGASLMDSNFPSMAAPLMWPEIPASGNRQQYQQQWQIDAFPQPLWGREEGNHNFITPENSLLSYDSSANTASLHSNQLKMEL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1314 372 Gene3D - 209 281 IPR036638 GO:0046983
Glsi11g1314 372 CDD bHLH_AtBPE_like 202 287 - -
Glsi11g1314 372 MobiDBLite consensus disorder prediction 137 219 - -
Glsi11g1314 372 MobiDBLite consensus disorder prediction 182 219 - -
Glsi11g1314 372 MobiDBLite consensus disorder prediction 146 162 - -
Glsi11g1314 372 FunFam transcription factor bHLH48-like isoform X1 209 281 - -
Glsi11g1314 372 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 122 354 IPR024097 GO:0006355
Glsi11g1314 372 SMART finulus 218 268 IPR011598 GO:0046983
Glsi11g1314 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 281 IPR036638 GO:0046983
Glsi11g1314 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
Glsi11g1314 372 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1314 Glsi-ChrGlsi11 8248924 8253678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1314 5 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.777 1.07e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g1314 HLH 2.2e-05 No_clan