Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1311 ATGCCTCTCCCTCTACACTTTGCTCCCTTTCTCATATGCTTCTTTGCTTCTTTCACTACCTCTCTGAACTCCGATGGACTCTCTCTTCTCGCCCTCAAAGCTGCCATTGACTCCGATCCTACTGGCGTCCTCAATTCTTGGTCCGAATCCGACTCCACCCCTTGTCGCTGGGCCGGTGTCGTCTGCGCTCACGACCATGTCACCCAACTCTACCTGCCTAACAAAGCATTAACTGGCTACATCCCCTCTGAACTCGGTTTGCTAAACTCTCTCAAGCGACTCAGTCTTCCCCACAACAACTTCTCCAACCTAATTCCTTCTCATCTCTTCAACGCCACCAATCTGGTCGTTCTCGACCTCTCTCACAACTCACTCACTGGTCCAATCCCCAACGCAATCAAGTCTCTCAAATCACTCAGACATTTGGATTTATCCTCAAATTTGCTTAATGGATCTCTCCCTGAAGCTCTCGCCGAGCTTATTGGACTTGTCGGAACCTTAAATCTCTCTCACAATCTCTTCTCCGGCGGGGTCCCGGAGTCTTTCGGGAGGCTTCCTGTAATGGTGAGTTTGGATTTTCAGAACAACAATTTGACCGGACAAATTCCTCAGGTAGGTTCCCTCCTAAACCAGGGCCCAACAGCTTTCTCGGGCAACCCTGGCCTTTGTGGGTTTCCTTTGCAAAATGCATGCCCAGAAGCTCAAAAACCCGACATTTTCAGAAGCACCGAAGACCCTCAAACCCCCAAAACATTAAATCCGGGCTTCCCAAGTGGAGGTCAAGAAGAGAAGGCGAAAGAGCGAGGCGGGTACGTCACTGTCCCTATAATTTCTGGCGTGTCACTGGTGGTTGGGGCCGTTTCGTTGTCAATGTGGCTATTGCGAAGAAGATGGACAGCCGACGAGGGCAAAGTGGGAAAACAAAAATTAGGCAATGAGGTTGAAGAAGAAGAAGGGGAAAAGGGTAAATTCGTGATCGTTGACGAAGGGTTTAATTTGGAATTAGAGGATTTATTAAGGGCTTCTGCGTATGTGGTGGGGAAAAGTAGGAGTGGCATCGTGTATAAAGTGGTGTCTGTTGGGAAGGGATCATGCCCGGCGGCGACAGTTGCGGCCGTCAGGCGGTTGAGTGAGGGTGATGCCACGTGGCGTCTAAAGGAGTTTGAATCTGAGGTGGAGGCCATTGGTAGGGTCCACCACCCCAATATTGTTCCATTGAGAGCATATTACTATGCAAACGATGAGAAACTGCTTATCACTGATTTCATCCGCAATGGAAGCTTGCACACTGCACTGCATGGAGGACCTTCCAAGTCTTTGCCTCCATTATCATGGGCAGCTAGGTTAAAAATTGCTCAAGGAGTTGCGAGGGGTTTGATGTACATACACGAGTTCAGTGGTCGAAAATATCTCCATGGCAACCTAAAATCAACAAAAATTTTACTGGATGATGATCTTCATCCTTACATATCGGGTTTTGGATTTACTCGTCTTGGTTTGAATACCTCAAAGTCCACTACATTGGCGCCAAAACGGCAAATATCAAAACAATCCATTGTAACGTCCGCAGTGTATGCAAAAGTTACAGCTTCCTGTAACAACTACTTGGCACCTGAGGTGCGCATGGTTGGTGGAAAGTTCACTCAAAAATGTGACGTGTATTCTTTTGGAATAGTGCTCTTGGAACTTTTGGCAGGTCGGCTGCCAGATTCAAGACCAGAAAATGATGATAATGTGCTAGAGAGTTTTGTGAGAAAAGCATTCAGGCAGGAGCAGCCCTTGTCTGATGTTATAGACCCAGCACTTCTGCCTGAGGTTTATGCTAAAAAGCAAGTTATCGCAGCATTTCACGTTGCACTGAACTGCACGGAATTTGACCCAGAGTTACGACCTAGAATGAGAACAGTGTCTGAGAGCCTTGAACGCATCAAAATACAATAA 1941 0.474 MPLPLHFAPFLICFFASFTTSLNSDGLSLLALKAAIDSDPTGVLNSWSESDSTPCRWAGVVCAHDHVTQLYLPNKALTGYIPSELGLLNSLKRLSLPHNNFSNLIPSHLFNATNLVVLDLSHNSLTGPIPNAIKSLKSLRHLDLSSNLLNGSLPEALAELIGLVGTLNLSHNLFSGGVPESFGRLPVMVSLDFQNNNLTGQIPQVGSLLNQGPTAFSGNPGLCGFPLQNACPEAQKPDIFRSTEDPQTPKTLNPGFPSGGQEEKAKERGGYVTVPIISGVSLVVGAVSLSMWLLRRRWTADEGKVGKQKLGNEVEEEEGEKGKFVIVDEGFNLELEDLLRASAYVVGKSRSGIVYKVVSVGKGSCPAATVAAVRRLSEGDATWRLKEFESEVEAIGRVHHPNIVPLRAYYYANDEKLLITDFIRNGSLHTALHGGPSKSLPPLSWAARLKIAQGVARGLMYIHEFSGRKYLHGNLKSTKILLDDDLHPYISGFGFTRLGLNTSKSTTLAPKRQISKQSIVTSAVYAKVTASCNNYLAPEVRMVGGKFTQKCDVYSFGIVLLELLAGRLPDSRPENDDNVLESFVRKAFRQEQPLSDVIDPALLPEVYAKKQVIAAFHVALNCTEFDPELRPRMRTVSESLERIKIQ 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1311 646 Gene3D Transferase(Phosphotransferase) domain 1 423 646 - -
Glsi11g1311 646 Gene3D Phosphorylase Kinase; domain 1 312 422 - -
Glsi11g1311 646 Pfam Protein kinase domain 346 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1311 646 PRINTS Leucine-rich repeat signature 136 149 - -
Glsi11g1311 646 PRINTS Leucine-rich repeat signature 115 128 - -
Glsi11g1311 646 SUPERFAMILY L domain-like 24 228 - -
Glsi11g1311 646 MobiDBLite consensus disorder prediction 240 263 - -
Glsi11g1311 646 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 644 IPR046959 -
Glsi11g1311 646 MobiDBLite consensus disorder prediction 241 255 - -
Glsi11g1311 646 SUPERFAMILY Protein kinase-like (PK-like) 345 642 IPR011009 -
Glsi11g1311 646 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Glsi11g1311 646 Gene3D Ribonuclease Inhibitor 165 233 IPR032675 -
Glsi11g1311 646 Gene3D Ribonuclease Inhibitor 22 164 IPR032675 -
Glsi11g1311 646 ProSiteProfiles Protein kinase domain profile. 340 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1311 646 FunFam Leucine-rich repeat receptor-like protein kinase 138 233 - -
Glsi11g1311 646 FunFam Leucine-rich repeat receptor-like kinase 27 137 - -
Glsi11g1311 646 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1311 Glsi-ChrGlsi11 8228504 8231694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1311 22 644 Receptor kinase-like Gene Family AT3G57830 61.224 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi11g1311 Pkinase 4.5e-25 CL0016