Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1310 ATGGCGGTTGAGGTTGCCGGTGTCTTATCCAGATATTCATTTGCTCTATGGTGCTGTCTTGTTTTCATAGTGGACGCTACTTATGATCGAACTAGTGAGTTATTGGGCGAGGCAACCCTTGGGAGAGTTGAGAGATTCATTTCTAGATTCGTAAACTGCAGTGACAACAACGATACGTCTTCGCCTAGTTATCAAGAATTCGAAGTCAAACCTCTTAAAGTACCAACCGAGGCTGCTCTGAACCCTATGAGCTCCCAGCAAGGCTATCGTGGGCTACCCCCTCACTATCCAATTCTAAGGCATAATTCCATTACAAGTCCCTCCATGGATAGCTCATATGGGCTGATGGGTTCGATGGGAATGGATCACGAAACGCAGTCGAAAAGCTTTAGTTCTCATCTTCTCAGGCAAAGTAGCTCCCCTGCTGGGCTTTTCTCCAACATCTCCTTTCAAAATGGGTATGCCACCACGAAAGGTGTACAAAACTATGGTGGGGTGAATGGCAGTAATGGTGACCTTACTCCATCTATGAACAGATTGAAGAATCATATTAGCTTTTCATCAAGAAGTACGTCCGCGGGAATTTTGTCTCAGATCTCCGAGATAGGAAGTGAAAGCATCGGGGCAACTAGCCCTGATGATGGTAGGCTGGGAGCTAGCAATGCTGATACTCGATATTATGGTCCTGAATTCCCGTATGGTTCCTGGAATGATACGTCACAGGTCTCAGAAAACCTAACTGGCATGAAAAGAGAGCAAGATAGTAATGAAAATTTATTTTCTGATGTTCAGAATGGAGAGCTAGGAAATCAGGTTCAGATGCTATCGCATCAGTTGAGTTTGCCTAAACCCTCAGCAGAGATGGCTACTATGGAGAAGTTTCTTCAATTCCCAGATTCTGTTCCTTGTAAAATAAGAGCAAAGCGGGGCTGTGCTACTCATCCTCGAAGCATTGCAGAAAGGATGAGAAGAACTCGGATCAGTGAACGAATAAGAAAACTCCAAGAGCTTGTCCCGAACATGGACAGGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGATCTTCAGAAACAATTCAGGATTCTGAGTGAGAATCGGGCAAACTGCAAATGTACAAGCATGCAGAATGCAGATATAAATCAAATTGCTTGA 1170 0.4419 MAVEVAGVLSRYSFALWCCLVFIVDATYDRTSELLGEATLGRVERFISRFVNCSDNNDTSSPSYQEFEVKPLKVPTEAALNPMSSQQGYRGLPPHYPILRHNSITSPSMDSSYGLMGSMGMDHETQSKSFSSHLLRQSSSPAGLFSNISFQNGYATTKGVQNYGGVNGSNGDLTPSMNRLKNHISFSSRSTSAGILSQISEIGSESIGATSPDDGRLGASNADTRYYGPEFPYGSWNDTSQVSENLTGMKREQDSNENLFSDVQNGELGNQVQMLSHQLSLPKPSAEMATMEKFLQFPDSVPCKIRAKRGCATHPRSIAERMRRTRISERIRKLQELVPNMDRQTNTADMLDLAVEYIKDLQKQFRILSENRANCKCTSMQNADINQIA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1310 389 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 106 382 - -
Glsi11g1310 389 FunFam Transcription factor bHLH130 family 312 381 - -
Glsi11g1310 389 Pfam Helix-loop-helix DNA-binding domain 316 362 IPR011598 GO:0046983
Glsi11g1310 389 Gene3D - 312 386 IPR036638 GO:0046983
Glsi11g1310 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 376 IPR036638 GO:0046983
Glsi11g1310 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 361 IPR011598 GO:0046983
Glsi11g1310 389 SMART finulus 317 367 IPR011598 GO:0046983
Glsi11g1310 389 CDD bHLH_AtbHLH_like 316 369 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1310 Glsi-ChrGlsi11 8221899 8224893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1310 44 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.512 7.01e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g1310 HLH 6.8e-11 No_clan