Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1301 ATGGCTTCGAGGATCAAGAGCACCAACCAAACAACTACTCAAGTGGAATCACTGCCACCACCTCCGCATCATATAGAAGAACATCCAATTTCTTTCGGAACGATGCAATTTTCTCCATCGTGCTCTATGCCCGGAAACTACCTCAGAAGCAAGGATTCCGGAGCTCATGATTTGAGTGACCTGGATCAAGCCCTTTTTCTCTACTTGGATGCACAGGCACAGGCAGACCCCTCCAGTACTGTTCAAGACCAAACACGTGAGCTTTCTCGCCCTCTCGTACAATCCAAAATTCTTCTTGCAACCCACTCAGAGAACTCATCATCAGGAATGAGGCCTCCAACTCTCAACATTTTCCCATCTCAGCCTATGCACCTACACCCACCGTCAACCGAGGCTAGCACGGATTTAGTTTCTCCGCAAACCAGTGCTTCCAAGGCACCATCGGAGCCATCCGCCAACCTACAAAACCAAGCCACCCCCGCGCCTGCACCAGACAAGACGGTCAAGCGGCGACAGGGCAATCGCAAGGCTGGTCGTCCATCGTCAAGTTCTGCACAGCAAATACCCAAACACCCAGATTTTAAGACTCTTAGAAGACTTGCCCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTCAGGAAAAAGGCATATGTTCAGCAGCTAGAGTCAAGCAGGATTAGGCTTAATCAGCTGGAGCAAGAGCTATTTCAAGCTAGAAGTCAAGGAACCTTCTTTGGCGGAGGTGCACTTTTGGGAGGAGAGCAAGGCCTTCCTATCGCTATGAACAGCATCAGCTCAGATGCTGCAGTGTTTGACGCAGAATATGGGAGATGGGTTGAGGATCATCATCGAATAGTGTGCGAGCTAAGAGCTGCAGTTGAAGAGCACCTTCCTGAGAACGAGATTCGGGTGTTGGTTGACAATTGCTTGGCACATTATGACCGAGTGATGATCCTCAAGAGCATAGTGACCAAAACAGACGTATTCCATATCGTGTCTGGCATGTGGAAGACCCCAGCTGAACGTTGCGTCATGTGGATCGGTGGGTTCAGGCCATCTGAACTCATTAAGGCGCTGACGGAGCAACAAATACTGAGCATATGTGGGTTGCAACAATCTACTCAACAGGCAGAAGATGCTCTGTCGCAATGCCTTGAAGCTCTCAATCAATCTCTCTCAGACTGTATAACATCTGACTATTTGAGTAGTCCTCCCAATATGGCTAACTATATGGGACAGATGGCCATGGCCATAAATAAGCTCTCCAATCTTGAAGGTTTCGTCAGACAGTGGGCTGTAATGACTGATTTAACAAGGCACTCAAGAATACGTTCCCAGTAG 1341 0.487 MASRIKSTNQTTTQVESLPPPPHHIEEHPISFGTMQFSPSCSMPGNYLRSKDSGAHDLSDLDQALFLYLDAQAQADPSSTVQDQTRELSRPLVQSKILLATHSENSSSGMRPPTLNIFPSQPMHLHPPSTEASTDLVSPQTSASKAPSEPSANLQNQATPAPAPDKTVKRRQGNRKAGRPSSSSAQQIPKHPDFKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELFQARSQGTFFGGGALLGGEQGLPIAMNSISSDAAVFDAEYGRWVEDHHRIVCELRAAVEEHLPENEIRVLVDNCLAHYDRVMILKSIVTKTDVFHIVSGMWKTPAERCVMWIGGFRPSELIKALTEQQILSICGLQQSTQQAEDALSQCLEALNQSLSDCITSDYLSSPPNMANYMGQMAMAINKLSNLEGFVRQWAVMTDLTRHSRIRSQ 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1301 446 MobiDBLite consensus disorder prediction 126 162 - -
Glsi11g1301 446 Coils Coil 214 241 - -
Glsi11g1301 446 Coils Coil 370 390 - -
Glsi11g1301 446 Pfam bZIP transcription factor 194 224 IPR004827 GO:0003700|GO:0006355
Glsi11g1301 446 FunFam BZIP family transcription factor 194 243 - -
Glsi11g1301 446 Gene3D - 195 243 - -
Glsi11g1301 446 PANTHER TRANSCRIPTION FACTOR TGA9 106 430 - -
Glsi11g1301 446 Pfam Seed dormancy control 286 359 IPR025422 GO:0006351|GO:0043565
Glsi11g1301 446 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 198 213 IPR004827 GO:0003700|GO:0006355
Glsi11g1301 446 ProSiteProfiles DOG1 domain profile. 268 446 IPR025422 GO:0006351|GO:0043565
Glsi11g1301 446 MobiDBLite consensus disorder prediction 102 194 - -
Glsi11g1301 446 SMART brlzneu 190 264 IPR004827 GO:0003700|GO:0006355
Glsi11g1301 446 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 193 235 IPR004827 GO:0003700|GO:0006355
Glsi11g1301 446 MobiDBLite consensus disorder prediction 1 18 - -
Glsi11g1301 446 SUPERFAMILY Leucine zipper domain 195 237 IPR046347 GO:0003700|GO:0006355
Glsi11g1301 446 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1301 Glsi-ChrGlsi11 8171283 8174925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1301 45 443 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 54.717 2.31e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi11g1301 DOG1 2.2e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2400 02 74184748 74190293 Glsi11g1301 11 8171283 8174925 CCT