Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1295 ATGGGTTCGAGCCCTGTGAGCGATGCGCTAGCTGCTTCTAACTCTTCTAGTGAGTCGCTTAATGGGTTAAAATTCGGTCAGAAAATCTACTTTGAGGATGTGGGTCTCGGAGGTCCGGCTAAATCCAGCGGGGGGGCGTCCTCCTCCTCCTCTGGGGCGACCCCGCCCAAGAAGGGAAGGAGTTGTGCGGTTCAGGGGGCTCATCCTCCCAGGTGTCAGGTAGAGGGCTGCAAAGTAGATCTAAGTGATGCCAAGGCTTATTATTCCAGACATAAAGTCTGTGGCATGCACTCCAAATCACCCAAGGTCATTGTCGCTGGTCTGGAGCAAAGGTTTTGCCAACAGTGCAGCAGGTTTCATCAGCTTACTGAATTTGATCAAGTAAAACGAAGTTGCCGCCGGCGACTTGCTGGCCATAATGAACGTAGGAGGAAGCCCCAAGCTAACTCCTTAATGCCATCTCGCTATGGCCGGCTCTCTTCTCCTAGTTTTGATAACAATGGGAGAGGTGGTAATTTTCTGATGGAAGTTGGTGCATATTCAAAGCTTACTTTGAGGAATCCATATCTAACTACAAGATCATCTGAGCAGCTGGTTCCTGGAAATCCAACCGCAACACTTCCCTGGCAGGGCAACTCGGATACTCAATCTGTCTTCTTCTTGCAAGGTTCGGTTGGTGGGGCAAGCTTCCCCGGTTCTAGAGATTGCACAGAAGAAAGTTTCACAGGAGTCACAGACAGGAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACTTGGCCCCCCAGAAACAGAGCTCCAAGTCTTGATATGAATAACTTTATGAATTTTGATGGGGCACCCATCACACAACTTGCTACATCTTCTCATGGTGGTGCAGCCATGAGTCAACTTTCCAATGTTCCTTGGTGTTTCAAAGGCATCGATGCTGGTAATTGTTCACATGAGGTTGTCCCTGATCTAGGCCTGGGTCAAATTTCACAGCCTATTACCAGTCAACTTCCCGGGGAGGAGCTTGATGTATCACAACAGGGCAGGAGGCATTATATGGATCTAGAGCAGTCAAGGGTCTTTGAATCTTCTCAGCACATGAATTGGTCACTCTAG 1104 0.4882 MGSSPVSDALAASNSSSESLNGLKFGQKIYFEDVGLGGPAKSSGGASSSSSGATPPKKGRSCAVQGAHPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPKVIVAGLEQRFCQQCSRFHQLTEFDQVKRSCRRRLAGHNERRRKPQANSLMPSRYGRLSSPSFDNNGRGGNFLMEVGAYSKLTLRNPYLTTRSSEQLVPGNPTATLPWQGNSDTQSVFFLQGSVGGASFPGSRDCTEESFTGVTDRSCALSLLSNQTWPPRNRAPSLDMNNFMNFDGAPITQLATSSHGGAAMSQLSNVPWCFKGIDAGNCSHEVVPDLGLGQISQPITSQLPGEELDVSQQGRRHYMDLEQSRVFESSQHMNWSL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1295 367 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Glsi11g1295 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 274 IPR044817 GO:0003677
Glsi11g1295 367 MobiDBLite consensus disorder prediction 1 20 - -
Glsi11g1295 367 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
Glsi11g1295 367 Pfam SBP domain 72 145 IPR004333 GO:0003677
Glsi11g1295 367 MobiDBLite consensus disorder prediction 136 164 - -
Glsi11g1295 367 MobiDBLite consensus disorder prediction 39 68 - -
Glsi11g1295 367 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
Glsi11g1295 367 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
Glsi11g1295 367 MobiDBLite consensus disorder prediction 42 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1295 Glsi-ChrGlsi11 8128356 8131021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1295 23 367 SBP-box Gene Family AT2G42200 43.631 2.48e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi11g1295 SBP 3.6e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1295 11 8128356 8131021 Glsi11g1295 11 8128356 8131021 ECH