Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1291 ATGAACGAGAACGGGATTGATTGCCTTCTAAATGGGGATTTTAATTCTGAGTTTTTTTATCATTCTTGTCAATATTTTGATATCAAACAGGCTTGGAATATGGGAACTTGTGGTCAGCCACATGCCATGGCTGGAGAAGCAGAACAGCCACAATACATGGTCCCTGACAAATTATCGAGCACCATTATGAGCCGTTTTGAATCACCCGCTTCTGCCTTTTATGCAACAGAACGCTGCATGGGGTTTCTGCAACATGATTCCAAAGTTAATAATCCCCCCTTGAGCTCTCCGTTTCCTAAGATTACCGTTTTTGAACTACCTCTGTATCAATCTCCCAGGGAAAACCCTTTCTTGGATTCAGCACACCAATCTGACCCCAACGTCGAATTGTCAAATACCTTGCAAGCAATGGTGAATTCTCAGTTGAATAAAAATCAATACTGTAGATCTCCAGAAAATTCCAATAAAATACAATCTGGGAATTTTCCAATTGAACAACAGACGTTGTTCATTGATGATGCTGCTGCTGCCTCAGTTGGGAGGAACTCATTAATTGCTAGTAAAGGAAATCAGGATCATACAGTAGGTTGTGGCGCATATAACTTACCAGTTGCACAGCTGAACCTCTCTTCTCAGCCAGAGAAGCTGTCTCCAACAATTTCATCAGCAAGTGAGTCAACTACTTCTAATGGCACAGTAATATCTAGTAAAACACGTATAAGATGGACACAGGATCTTCACGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGTGGTGCTGACAAGGCAACACCAAAAGCTATATTAAAGCAGATGGGCTCAGATGGATTGACCATCTACCATGTAAAGAGTCATTTACAGGTCTTCCACTTTCTTCATTTCTTCATCATGATTGGAATCTTCTTTCCAGATATCCTAACAAACAGAGTTTTTAACCCACCTGTCTTGCAGAAATATAGAATGGCAAAATACATGCCAAACCCGGCTCGAGGGAAATCTGACAAAGGAGCCTTCATAGAGGATGTGATTCATATTGACTTGCTGTTGACCTATAACATACCGAATTCACTGCCGTTGAATTGCAGTGGCTTCCAAATTAGAGAGGCACTTCAGCTACAGCTTGATGTTCAGAGGCGTCTTCACGAACAGTTAGAGATTCAGAGAAAATTACAGCTCCAAATTGAAGAACAGGGAAAGCATTTGAAGATGATGTTTGAACAGCAGAAGACAACTAACAGGTTCATGAGTACTCAGAATTTGGGCAGTAAAGCTAATGATGATACATCTGTTAGTGTTGAATAG 1302 0.4094 MNENGIDCLLNGDFNSEFFYHSCQYFDIKQAWNMGTCGQPHAMAGEAEQPQYMVPDKLSSTIMSRFESPASAFYATERCMGFLQHDSKVNNPPLSSPFPKITVFELPLYQSPRENPFLDSAHQSDPNVELSNTLQAMVNSQLNKNQYCRSPENSNKIQSGNFPIEQQTLFIDDAAAASVGRNSLIASKGNQDHTVGCGAYNLPVAQLNLSSQPEKLSPTISSASESTTSNGTVISSKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKQMGSDGLTIYHVKSHLQVFHFLHFFIMIGIFFPDILTNRVFNPPVLQKYRMAKYMPNPARGKSDKGAFIEDVIHIDLLLTYNIPNSLPLNCSGFQIREALQLQLDVQRRLHEQLEIQRKLQLQIEEQGKHLKMMFEQQKTTNRFMSTQNLGSKANDDTSVSVE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1291 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 296 IPR017930 -
Glsi11g1291 433 SUPERFAMILY Homeodomain-like 235 290 IPR009057 -
Glsi11g1291 433 Coils Coil 367 387 - -
Glsi11g1291 433 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 229 418 IPR044848 GO:0003700
Glsi11g1291 433 Pfam Myb-like DNA-binding domain 241 287 IPR001005 -
Glsi11g1291 433 NCBIfam myb-like DNA-binding domain, SHAQKYF class 237 289 IPR006447 GO:0003677
Glsi11g1291 433 Pfam MYB-CC type transfactor, LHEQLE motif 365 410 IPR025756 -
Glsi11g1291 433 MobiDBLite consensus disorder prediction 412 433 - -
Glsi11g1291 433 Gene3D - 236 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1291 Glsi-ChrGlsi11 8108180 8110567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1291 226 424 G2-like Transcription Factor Family AT4G28610 42.365 1.85e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi11g1291 Myb_CC_LHEQLE 7.9e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1291 11 8108180 8110567 Glsi11g1291 11 8108180 8110567 ECH