Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1285 ATGCAATTCCATCCCAAACAGGAGGCTCTCCTTTCAAGTTTCTTCAGTCATAGCTATTTGGATCCAGAACTGAGACTCCTCGTCCGGACTCTGCTGCGTTCAAAACCATCTGAAACCCTAAACTTTTTACGTTTTCGACAACCGGAAGATTCTCTCTGTCGCGCGCATTTTTCACTTCCACCATTTTTTTCCCTTATAATCTTAAATTTCTCTATAGAAAATTGGCGGTTGATAGTTTTCCTTGCATTAGCGGCAGATCGGAAAGGAGCTAGAGGTGAAAGAAAAAGAGTGCGACGTAATAATTTGACAGGTCAGTTCTGGGAACTCCGCTTGGTTAGAAAGCTGATGGCGTCCAAAGTTCCGAGGTCTAAGATTGATCATGAAACGAGAGCAAAGCGACAAAAGGCACTTGAAGTTCCAAGGGAGCCCCGACGACCCAAAACTCATTGGGATCATGTCTTAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAACTCAGGCAAAGAAAGTTGCTTTAAGAGCCAGCAAGGGTATGCTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCATCGGTTAAGAAAAGTCGCACTAAATATTTCTAAGGATGTTAAGAAATTCTGGATGAAAATTGAAAAGCTGGTTCTTTACAAGCATCAGATGGAGCTTGATGAGAAAAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTCTGGGGCAAACTGAAAGGTACTCAACCATGTTGGCTGAAAATCTTGTGGATGCTATTAAACCAGTAGAGAAACAGTCAGCAGAGAATCATAGGAGTACTCGACAAAAGGGAGTAGATGCAGACATGATCAACGAATCTAAAGAAGCTAATGTTGAGTTTCAGTCAGATGCTGTTGACAATGATGAAGAATATGATGTACAATCTGATGATGAATCGGAGGACGATGAGCAGACCCTTGAGGAAGATGAGGCTCTTATAACTGAAGAAGAAAGGAAAGAGGAATTGGCAGCTTTGCATAATGAAATTGATCTTCCACTTGAGGAGTTGCTGAAACGTTATGCTGGAGGTAAAGGATCAGTTAGTCGAGAAAGTAGTCTGGAGCATAGTGAAGATGATAATAAAATAGTCAAAGCTGGTGATGGCAATGAAAATGGAGGTGATCTTTTATCTGTTAGTAAGATTGGCCCTAGCAACGCCAGCATGGTACCTGGTCGTCGTTGTGATGAAAGTAATGGGGGGCAAACTACATCAGCAAATAGTCTATCTAAAGATGAGACCTGCCAATCTGAAAATCTAAAACAAATTTCAAGTGAGAGGGCCAATGAAAATTTTGCATATGACTTTAGTGATGAAGAGGAAGATGGTGAGTTCTTGCTTGCCACAGAAGATAAGGATGATGAAACAACCTTATCCGAGGAAGAAAAACTGGAAAGAGTGGATGCAATTGATCCCAAGGATGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTTGAGGAGCTCCTGGCAAGGTATAGAAAGTACTCCAGTGACAATGAAGATGGGGAAGATGAATCTGACGATGCTTCTGCCTTATCGGAGGACCTTTTGGATTCTTGGCTCCATGAAGATAGGCAGAGGGATCCTGCTGTTTCTATGGATGAAGATGTCAAGCCTGTTGAGCACTTGGCTATTGTACAGTCCCAGGTAGAAGAACATAGGGAAGCTCCTCATGAATATTCAGATGGAAGGGAGAGTGAAAATATAATTGCAGATGCAGCAGCAGCTGCAAGATCAGCACAACCCACTGGAAACACATTCTCCACAACTAAAGTGCGCACAAAGTTCCCTTTTCTACTCAAGTACCCTCTTCGCGAGTATCAACACATTGGATTGGATTGGCTTGTCACAATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGTAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGCCCACATCTTATTGTGGTACCAACTAGTGTCATGCTTAACTGGGAAACTGAATTTCTCAAATGGTGTCCTGCTTTTAAAATTTTGACTTACTTTGGAAGCGCAAAGGAGCGGAAGCTTAAAAGGCAAGGATGGTTGAAACTAAATTCATTTCATGTTTGCATAACAACCTATAGACTAGTTATTCAGGATTCTAAGGTTTTTAAGCGCAAGAAATGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAATTGGAAGTCACAAAGATGGCAAACTCTTTTGAATTTCAATTCAAAACGGCGTATTCTCCTGACTGGTACGCCACTGCAGAATGATCTTATGGAACTCTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTTCAGTCTCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCTGGGATGGTAGAGGGAGAGGAAAAAGTGAATAAGGAGGTTGTTGATCGCTTGCATAATGTCCTTCGTCCATTCATACTCCGTCGATTAAAGCAAGATGTGGAGAAGCAACTCCCAATGAAACATGAGCATGTCATATACTGTAGACTGTCAAAGAGGCAGCGGAATTTGTATGAAGACTTCATTGCTAGTTCAGAGACCCAGGCCACTCTTGCAAGTTCCAATTTTTTTGGGATGATTAGTATTATAATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGGGGTATTGATATTCAGCTAAGTTCTTTGGTGTGTTCAATGTTATCACCTAATTCTTTTTCAATGGTAGACCTAAGAGGTTTAGGTTTTCTATTTACTCAGCTTGATTATAACATGACATCTTGGGAGAGTGATGAAGTAAAAGCTATTGAGACCCCTGGAAGTCTAATTATGGAGCGTGCTGATATGCTTGATCTACAAGTAATTAGGCCTGAATTGAAGTATCAGAAAAAGCTTCATGGAACTAATATTTTTGAGGAAATTCGGAGGGCAATTTGGGAAGAGAGGCTAAGACAAGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAATTCCTTAAGGTGTAAAAAAAGGCCCATCTACTCTACGACCCTACGGGATCTTCTTACCATTAGGCATCCTGTATATGACATTTATCAGGTGAAGGCTAACCCTATTTCCTACATGTACTCCTCAAAACTAGCTGACATTGTCCTCTCTCCAGTTGAACGATTCCAAAGTATGATAGATGTGGTTGAAAGTTTCATGTTTGTGATTCCAGCTGCACGAACTCCACCTCCTGTTTGTTGGTGCAGTAGAAGTGAGACACCTGTATTTCTGCATCCATCTTACAAGCAGAAATGCTCTGAAGTTATATCACCCCTTCTATCACCAATCAGGCCTGCAATTGTCCGACGGCAAGTGTATTTCCCAGATAGGCGTCTTATACAATTTGATTGTGGGAAACTGCAGGAGCTTGCAATATTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGGATTGATATTCACACAGATGACAAAGATGCTTGATATATTGGAGGCGTTCATTAATCTGTATGGTTACACTTACATGCGATTAGATGGATCAACACAACCAGAGGAGAGGCAGACCTTAATGCAACGCTTTAACACAAACCCCAAAATTTTTCTTTTCATCTTGTCAACCCGAAGTGGGGGTGTTGGTATAAACCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCAGCTATGGATCAACAGGCTCAAGATAGGTGCCATAGGATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATAAGCGAAAGCACCATTGAAGAGAATATTTTGAAGAAAGCAAAGCAGAAGCGTGCACTTGATGATCTAGTTATACAAAGTGGGGGTTATAATACTGACTTTTTCAAGAAGCTTGATCCTATAGAATTATTTTCAGGTCATAGAACTCTTACCATAAAAAATATGCCAAAGGAGAAAATCCAGAACAGTGGAGCTGAAGATCCTGTGACTAATGCAGATTTAGAGGCTGCATTAAAATATGCTGAAGATGAAGCAGATTATATGGCATTAAAGAAAGTTGAACTGGAAGAAGCTGTGGACAACCAGGAGTTCACGGAAGAAGCCATTGGGAGGCTTGAGGAGGATGAGTATGTAAATGAGGATGATATGAAGGTTGATGAGCCTGCAGAACTAGGTGAATCAGTTTCGAAGTTAAGCAAAGAGAATGCATTAATGCCAGTTGGAAGTGATCCTAAGGAAGAAAGACCTCTCTCTATAGTTGTCAAAGAAGATGATGTTGACATGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGTTGCATCTGGACAAGCTATCTCAGCCTTTGAGAATCAGCTACGTCCAATTGATCGATATGCCATTCGTTTTCTGGAGCTTTCGGATCCAATTATAGATAAAGCAGCTTTGGAATCTGAAGTCAGGATTGAGGATACGGAATGGGAGTTGGATCGCATTGAGAAGTACAAGGAGGAGATGGAAGCTGAAATTGACGAAGATGAGGAACCTCTTGTATATGAAAGATGGGATGCTGATTTTGCAACTGAGGCATACCGACAACAAGTAGAGGCATTAGCTCAACATCAATTGATGGAGGAACTTGAAAATGAGGCTAAACAGAAAGAAGACGCTGATGAAGAAAATTGTGATTCCAGAAGGATGCAAACACCAAGTGATTCTAAGCCTAGACCTAAAAAGAAACCCAAAAAAACCAAGTTTAAATCCCTGAAGAAAGGATCTTTAGCCTCTGAAATGAAACCTATAAAAGAAGAACCACAACTAGAGCCAATGTCTATAGATGATGAGGTTGCCACTAGTCTGGACCTGGTGTCTCCAAATTCAACTACGCAGAAAAAACGTAAAAAGTCTAAATTAATAGCAGATGGTGAAGAAGAGAAGTTATTGAAGAAATCAAAAAAGACCAAGAGGGCTCCTTCTGACGTTTGCCAAGAAGACCAAGGTTTTCTAGATGACAATGCAGAATCAAGGCAATGTGAAAGTCTGGTTGACATTGAACAGAAACCTGCAAGCAGGAGTAAGATGGGAGGGAAAATCTCCATCACTTCAATGCCAGTAAAACGGATTCTGGTGATAAAACCAGAAAAAGTGAAGAAGGGAAATGCTTGGTCCAAAGATTGTGTTCCATCAGCTGATTTTTGGTTGCCACAGGAAGATGCAATTTTATGTGCAATAGTTCATGAATATGGTTCAAACTGGAGCTTGGTTAGTGAAACACTTTATGGCATGACTGCTGGTGGGGCGTACAGGGGAAGATATCGTCATCCTGTCCACTGCTGTGAGAGGTTCAGAGAACTAGTCCAAAAATATGTTTTGTCAACAGCAGACAATGCTAATCATGAGAAGATCAACAATAGTGGTTCTGGAAAGTCTCTTAAAGTTACAGAGGATAACATTCGGATGTTGTTAGATTTTGCTTCAGAGCAGGAAAATAGAGAATTACTGCTGCAGAAGCATTTTTTTGCCCTGCTTTCATCTGTCTGGAAGGTGGCATCACATGTTGACCAAAGGGAAAATCCATCACCAACCTGGAATAATCGCTATTTTGATCAAAGTTTCTTTACTTCCATTGGGCAGCATTCTCAGAATTCCCTGAAGAAACCTTCTGAAAGGATGAAATTCACTAATCTGGTCCAGAGCAGGAAGTTATTAGCTGCTGCACTTGATAACAACAGCAGTGAGCAACAGGATGACAAACTCTCCCCCTCTAATGAGGATGAGGATGTGCCAGCAACTGCAGCTCAGCTGCATATATCACTGGAGTTCCAGAAAGAAGAGAGCGACACCTTGTTTTCATTTCCATCTGTTATAAATTTATCAATATATGGGACAGAACCACTTCCATCATTAAATAAGCAAACAGGGGAAGATGATCATCTTAAAGCTTGTAGTTCTGCTGCTGAGGATCGTTTCAGGGTGGCAGCAAGAGCTTGCGAGGAGGACAGTTCTGGATGGGCTTCATCAGTATTCCCAACAAATGATGCAAGGTCCAGACAAGGATTTAAGATACAATCTTTGGGAAAGCACAAGTCTTCCATCCCGGACTCCATTAAGCCTTCTAAATCGAAGTCCAAAAGAACTTCGATGGATTCTAGTGAGATGCGTCACCAACGGGCTGAGCAATTATTCCAGTCAGTGCCACCACTTCAAGCCAAGGACTTGGGATTTGGTCACGCTGCATCAACTATGGACGAAGCTGGGACTGAAAATATGGATTGCAATCTACCCTTTGACTTAAATGTGGAAAATTCAATGGAAACGGAGAGTTTTGGTGTGGTCCCACATAATTATGTTACTGGCTTAATCTCAGACCTCGATGATTTTTCAGCATTCCACGAATATACTGACATTGGATAG 6486 0.411 MQFHPKQEALLSSFFSHSYLDPELRLLVRTLLRSKPSETLNFLRFRQPEDSLCRAHFSLPPFFSLIILNFSIENWRLIVFLALAADRKGARGERKRVRRNNLTGQFWELRLVRKLMASKVPRSKIDHETRAKRQKALEVPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLTQAKKVALRASKGMLDQATRGEKKMKEEEHRLRKVALNISKDVKKFWMKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAIKPVEKQSAENHRSTRQKGVDADMINESKEANVEFQSDAVDNDEEYDVQSDDESEDDEQTLEEDEALITEEERKEELAALHNEIDLPLEELLKRYAGGKGSVSRESSLEHSEDDNKIVKAGDGNENGGDLLSVSKIGPSNASMVPGRRCDESNGGQTTSANSLSKDETCQSENLKQISSERANENFAYDFSDEEEDGEFLLATEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYRKYSSDNEDGEDESDDASALSEDLLDSWLHEDRQRDPAVSMDEDVKPVEHLAIVQSQVEEHREAPHEYSDGRESENIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKLNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFILRRLKQDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASSNFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMWGIDIQLSSLVCSMLSPNSFSMVDLRGLGFLFTQLDYNMTSWESDEVKAIETPGSLIMERADMLDLQVIRPELKYQKKLHGTNIFEEIRRAIWEERLRQAKERAAAIAWWNSLRCKKRPIYSTTLRDLLTIRHPVYDIYQVKANPISYMYSSKLADIVLSPVERFQSMIDVVESFMFVIPAARTPPPVCWCSRSETPVFLHPSYKQKCSEVISPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRGLIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTDFFKKLDPIELFSGHRTLTIKNMPKEKIQNSGAEDPVTNADLEAALKYAEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDMKVDEPAELGESVSKLSKENALMPVGSDPKEERPLSIVVKEDDVDMLADVKQMAAAAVASGQAISAFENQLRPIDRYAIRFLELSDPIIDKAALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYERWDADFATEAYRQQVEALAQHQLMEELENEAKQKEDADEENCDSRRMQTPSDSKPRPKKKPKKTKFKSLKKGSLASEMKPIKEEPQLEPMSIDDEVATSLDLVSPNSTTQKKRKKSKLIADGEEEKLLKKSKKTKRAPSDVCQEDQGFLDDNAESRQCESLVDIEQKPASRSKMGGKISITSMPVKRILVIKPEKVKKGNAWSKDCVPSADFWLPQEDAILCAIVHEYGSNWSLVSETLYGMTAGGAYRGRYRHPVHCCERFRELVQKYVLSTADNANHEKINNSGSGKSLKVTEDNIRMLLDFASEQENRELLLQKHFFALLSSVWKVASHVDQRENPSPTWNNRYFDQSFFTSIGQHSQNSLKKPSERMKFTNLVQSRKLLAAALDNNSSEQQDDKLSPSNEDEDVPATAAQLHISLEFQKEESDTLFSFPSVINLSIYGTEPLPSLNKQTGEDDHLKACSSAAEDRFRVAARACEEDSSGWASSVFPTNDARSRQGFKIQSLGKHKSSIPDSIKPSKSKSKRTSMDSSEMRHQRAEQLFQSVPPLQAKDLGFGHAASTMDEAGTENMDCNLPFDLNVENSMETESFGVVPHNYVTGLISDLDDFSAFHEYTDIG 2161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 1614 1633 - -
Glsi11g1285 2161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 849 IPR027417 -
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 1573 1599 - -
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 2046 2078 - -
Glsi11g1285 2161 FunFam Photoperiod-independent early flowering 1 597 872 - -
Glsi11g1285 2161 PANTHER HELICASE SRCAP-RELATED 128 2064 - -
Glsi11g1285 2161 SMART ultradead3 623 816 IPR014001 -
Glsi11g1285 2161 Coils Coil 1561 1584 - -
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 1932 1953 - -
Glsi11g1285 2161 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1172 1322 IPR001650 -
Glsi11g1285 2161 Gene3D - 596 872 IPR038718 -
Glsi11g1285 2161 Coils Coil 1386 1406 - -
Glsi11g1285 2161 Pfam Helicase conserved C-terminal domain 1171 1281 IPR001650 -
Glsi11g1285 2161 ProSiteProfiles Myb-like domain profile. 1757 1810 IPR001005 -
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 272 340 - -
Glsi11g1285 2161 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 1134 1388 - -
Glsi11g1285 2161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 851 1346 IPR027417 -
Glsi11g1285 2161 Gene3D - 1753 1814 - -
Glsi11g1285 2161 Coils Coil 1513 1533 - -
Glsi11g1285 2161 Pfam HSA domain 142 208 IPR014012 -
Glsi11g1285 2161 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 873 938 - -
Glsi11g1285 2161 FunFam Photoperiod independent early flowering protein 1753 1814 - -
Glsi11g1285 2161 Pfam SNF2-related domain 644 916 IPR000330 GO:0005524|GO:0140658
Glsi11g1285 2161 Gene3D - 1139 1387 IPR027417 -
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 272 295 - -
Glsi11g1285 2161 SMART bromneu2 138 209 IPR014012 -
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 418 452 - -
Glsi11g1285 2161 ProSiteProfiles HSA domain profile. 137 209 IPR014012 -
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 304 337 - -
Glsi11g1285 2161 CDD DEXQc_SRCAP 627 849 - -
Glsi11g1285 2161 SMART helicmild6 1198 1281 IPR001650 -
Glsi11g1285 2161 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 639 804 IPR014001 -
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 2057 2078 - -
Glsi11g1285 2161 Coils Coil 321 341 - -
Glsi11g1285 2161 Coils Coil 508 528 - -
Glsi11g1285 2161 CDD SF2_C_SNF 1157 1292 - -
Glsi11g1285 2161 Gene3D - 873 926 - -
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 1573 1664 - -
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 372 387 - -
Glsi11g1285 2161 MobiDBLite consensus disorder prediction 365 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1285 Glsi-ChrGlsi11 8061215 8078182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1285 647 919 RAD5 or RAD16-like Gene Family AT5G43530 29.193 1.07e-28 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi11g1285 SNF2_N 2.8e-70 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2416 02 74287114 74291750 Glsi11g1285 11 8061215 8078182 CCT