Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1284 ATGGATACCCGCAAGAGAGGAAGGCCTGAAGCTGGAGTCCATGTTAATGGTGGTCACAAGAAGTCCAAGCAAGAAATGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCGTTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATTCTGTTGCCCAGATGATGAATTTAGCTCCTGCTGCACCTCCACCATCTAGAACTGTTACAGCCCCACTCCCAGTCCCTAACGGGTCTACACCTACCGCTAAAACCCGCATATGCAACAAGTATAATACTGCTGAAGGCTGCAAATTTGGTGATAAATGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCCTATTGCTTCATTCATTGATGATCATCGCACAATGGGACCTATTGCCAGCCGTTTGGCTGGTCGAATGGAGCCTCCTCCTGGTCCTGCTGCTAGCTTTGGGGCCAATGCCACTGCCAAGATCAGTGTAGAAGCTTCATTGGCTGGAGCAATTATTGGAAAGGGTGGTGTGAACTCCAAGCAGATCTGTCGCCAAACAGGGGCCAAACTATCAATTCGGGATCATGAGTCAGATCCGAATCTTAGAAATATTGAACTTGAGGGTAGCTTTGAACAAATTAAGGAGGCGAGTAATATGGTAAAAGAGTTACTGGTGACCTTGTCAATGTCGCTGCCACCTAAAACTCATGGCGTTCCAGGATCACAAGGCTCTCATGGAAGCAACTATAAGACAAAGCTGTGTGAGAATTTTGCCAAAGGATCTTGCACCTTTGGAGAAAGATGTCACTTTGCACATGGGGCTGCTGAATTGCGTAAAGCCGGAGTATGA 879 0.4733 MDTRKRGRPEAGVHVNGGHKKSKQEMDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNSVAQMMNLAPAAPPPSRTVTAPLPVPNGSTPTAKTRICNKYNTAEGCKFGDKCHFAHGEWELGKPIASFIDDHRTMGPIASRLAGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIKEASNMVKELLVTLSMSLPPKTHGVPGSQGSHGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRKAGV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1284 292 Gene3D - 94 130 - -
Glsi11g1284 292 Gene3D - 250 290 - -
Glsi11g1284 292 ProSiteProfiles Type-1 KH domain profile. 166 230 - -
Glsi11g1284 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 283 IPR000571 GO:0046872
Glsi11g1284 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Glsi11g1284 292 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Glsi11g1284 292 SMART c3hfinal6 258 284 IPR000571 GO:0046872
Glsi11g1284 292 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Glsi11g1284 292 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Glsi11g1284 292 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Glsi11g1284 292 MobiDBLite consensus disorder prediction 1 32 - -
Glsi11g1284 292 PANTHER CCCH ZINC FINGER/TIS11-RELATED 24 146 IPR045877 GO:0003729
Glsi11g1284 292 CDD KH-I_AtC3H36_like 169 234 - -
Glsi11g1284 292 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Glsi11g1284 292 ProSiteProfiles Zinc finger C3H1-type profile. 258 285 IPR000571 GO:0046872
Glsi11g1284 292 FunFam Zinc finger CCCH domain-containing protein 253 289 - -
Glsi11g1284 292 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Glsi11g1284 292 MobiDBLite consensus disorder prediction 1 26 - -
Glsi11g1284 292 Gene3D K Homology domain, type 1 166 235 IPR036612 GO:0003723
Glsi11g1284 292 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 156 236 IPR036612 GO:0003723
Glsi11g1284 292 Pfam KH domain 169 232 IPR004088 GO:0003723
Glsi11g1284 292 SUPERFAMILY CCCH zinc finger 257 288 IPR036855 GO:0046872
Glsi11g1284 292 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Glsi11g1284 292 SMART kh_6 165 235 IPR004087 GO:0003676
Glsi11g1284 292 FunFam Zinc finger CCCH domain-containing protein 52 163 260 - -
Glsi11g1284 292 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1284 Glsi-ChrGlsi11 8055431 8059314 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi11g1284 KH_1 2.4e-12 CL0007