Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1273 ATGCACTTTTCTTGGGTGCCTAAGTCTCAATTCCTGGCAGTAATCTTCAGTATTATTGCCCTTATCCAAGTTGGCTGCTTTTCCTTCAATTTCCCTACCTTCCAACCACAGGATGCAGATCAATTATTATTGAGCAAAAACTCAAAAATATATTTAGATGCCATCCAAGTAACCCCTGATATTCGCGGCAAAATAGACAATTATTCTGGACGAACTTTCTACAGAAGGCCGTACAGACTCTGGAGCAAGAGCAAGAACCAAATTGCTGCGTTCAATACTACTTTCGTCCTCAATATCAACGCCCAAACCTCCCCAGGAGGCGAAGGATTGGCCTTTATATTAACTGGAGATACCACTCTTCCTGAAAATAGTGAAGGGAAATGGCTTGGCATTGTAAATGCTACTACCAATGGAACTTCTCAAGCAGGGATTTTGGCAGTAGAGTTCGACACACAAAACAACTTCCCGGAAGATGGCCCTAACAGTCATGTTGGTATTAACATCAACAGTATCAATTCCATGAAAAAGGTTCCCTTAACCAACTTTGGGATCAATATTTCAAAAGGTATTAATGTAACGATGAGAATTCAGTATGCTGAAGATATATTCTCAGTTTTTGGTTCCATGAATGGAACTGAAGGCATGGAAACTCTGTTAATATCTCCACCACTTAATCTATCTTCGTATCTCCCAGAAGAGGTTTTTTTGGGTTTCTCGGCTTCAACAAGTAACTATACAGAGCTAAACTGCGTAAGAGCATGGGAATTTAACGGTACCCTCATTGACGATGATAATCAACGGCTGTTGTGGGTGTGGATCACAGTTCCTGCAGCGTTGATTATCATAGTTGGGGTGGTCTTTTTCTTGCTTTGGCAAAGAAGACGCAATATCGAGAAAGCAGACGACGCCTATCCAAGAATAGAGGATCAGATTCAAAACTCCTCTATGGCACCAAAGAAGTTCCAACTAAGGGAAATCAGAAGAGCAACAGGCAGATTCAATCCTCAAAACAAGCTAGGGGAAGGTGGTTTTGGAACTGTCTACAAGGGACTCTTGGGAGGTAAGGAGATAGCAGTGAAGAGAGTCTCCAAGAATTCACATCAAGGCAAACAAGAATTCATAGCAGAAGTCACAATAATTGGCAGTCTTCACCACAAAAATTTGGTGAAATTGATCGGGTGGTGCTATGAGAGCCGAGAATTACTCCTTGTCTACGAATTCTTGCCTAACGGGAGCCTAGACAGGTACCTGTTTGATGATGACAAGTTTGGCTGCAATGAGGGATCAATACTGAGCTGGGAAACGAGACATTGCACAATATATGGGGTGGCTCAGGCACTAGAATATCTTCATAACGGCTGTGAGAAAAAAGTACTTCACAGAGACATAAAAGCCAGCAATATACTGTTGGATTCAGACTTCACTGCCAAGTTGGGAGACTTTGGATTGGCTCGTACCATTCAGAAAAGAGACGAAACTCACCACTCTACAAAAGAAATTGCAGGAACGCCTGGTTACATGGCGCCAGAAACCTTTCTTACCGGCAGGGCAACTGTGGAGACTGACGTTTATGCATTCGGTGTTGTTGTATTAGAAGTTGTGTGTGGAATGAGACGAGGGAATCTGTATGCCCAAAAGGACGACTATAGGAATAGCATTGTGTATTGGGTGTGGGAGCTTTATGGTAAGGGGAAAATACTTACAGCAGTGGATTATAGGATAAAAAAGGAAATTAAGGAGGAAGAAGTGGAAGATGTGCTCGTTCTAGGGTTGGCCTGTTGTCATCCAAACCCACACCACAGGCCCTCTATGAGGACTGTTATGCAGGTTCTCACAGGGGAAGCAGCTCCACCAGTGGTACCCAAGGAAAGACCATCTTTTGTGTGGCCTGCCATGCCTCCTTCATTCAAACAAGACGTAGATAACTCTCTCACAGGAAGCCAACTCCATTCTTTCTTAGAAGTCACTGGCAGATGA 1977 0.432 MHFSWVPKSQFLAVIFSIIALIQVGCFSFNFPTFQPQDADQLLLSKNSKIYLDAIQVTPDIRGKIDNYSGRTFYRRPYRLWSKSKNQIAAFNTTFVLNINAQTSPGGEGLAFILTGDTTLPENSEGKWLGIVNATTNGTSQAGILAVEFDTQNNFPEDGPNSHVGININSINSMKKVPLTNFGINISKGINVTMRIQYAEDIFSVFGSMNGTEGMETLLISPPLNLSSYLPEEVFLGFSASTSNYTELNCVRAWEFNGTLIDDDNQRLLWVWITVPAALIIIVGVVFFLLWQRRRNIEKADDAYPRIEDQIQNSSMAPKKFQLREIRRATGRFNPQNKLGEGGFGTVYKGLLGGKEIAVKRVSKNSHQGKQEFIAEVTIIGSLHHKNLVKLIGWCYESRELLLVYEFLPNGSLDRYLFDDDKFGCNEGSILSWETRHCTIYGVAQALEYLHNGCEKKVLHRDIKASNILLDSDFTAKLGDFGLARTIQKRDETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVVVLEVVCGMRRGNLYAQKDDYRNSIVYWVWELYGKGKILTAVDYRIKKEIKEEEVEDVLVLGLACCHPNPHHRPSMRTVMQVLTGEAAPPVVPKERPSFVWPAMPPSFKQDVDNSLTGSQLHSFLEVTGR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1273 658 Gene3D Phosphorylase Kinase; domain 1 307 407 - -
Glsi11g1273 658 Gene3D - 26 269 - -
Glsi11g1273 658 FunFam probable L-type lectin-domain containing receptor kinase S.5 408 617 - -
Glsi11g1273 658 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 260 IPR013320 -
Glsi11g1273 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Glsi11g1273 658 Pfam Protein kinase domain 335 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1273 658 Gene3D Transferase(Phosphotransferase) domain 1 408 617 - -
Glsi11g1273 658 SUPERFAMILY Protein kinase-like (PK-like) 314 611 IPR011009 -
Glsi11g1273 658 PANTHER - 56 621 - -
Glsi11g1273 658 ProSiteProfiles Protein kinase domain profile. 333 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1273 658 CDD STKc_IRAK 339 613 - -
Glsi11g1273 658 CDD lectin_legume_LecRK_Arcelin_ConA 27 260 IPR001220 GO:0030246
Glsi11g1273 658 ProSitePatterns Protein kinases ATP-binding region signature. 339 360 IPR017441 GO:0005524
Glsi11g1273 658 SMART serkin_6 333 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1273 658 FunFam Probable L-type lectin-domain containing receptor kinase S.5 26 265 - -
Glsi11g1273 658 FunFam Probable L-type lectin-domain containing receptor kinase S.5 318 407 - -
Glsi11g1273 658 Pfam Legume lectin domain 28 260 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1273 Glsi-ChrGlsi11 8007597 8009573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1273 3 627 Receptor kinase-like Gene Family AT5G55830 35.022 1.41e-117 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Glsi11g1273 Pkinase 9.9e-50 CL0016