Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1268 ATGCGCAACCCGATTCAGCACGAGTACAAGCCACTCGTGAAAGTGATGGGTTCGTACTTCATCACAACCGTCCATTTCCATCTACAAAGTGAGATCACGTGGAGAGTAGGTCCGAGCTTTTCCTCAACACCGCCCTCTGCAATTACGAGTCACAACCCAGACATTCACGTTGTGATGGGGGAAGAGATATCCGATGCAATGAACCTTGAATTGAATCTGGGTCTCGGTCCAGAGCCACCGCCTAGCTCCGTGAACTTAGATGATTTGTTTGAGGGGCCTCTCCGTAGATTTAGTGAAGCCGTAAGGGTTAGGGCTCGACAACAAAGGAGATGGCGGCGTGATCTTATCCCAGCTGAAGACCGGCTGCATTTTCATATGCCGCTTGAATCCCAAAATATTTCAATGGTGGAGTTAAATCAACTTGTGCGCAACCCTGTTAATGAAAGTGCACTAGAGGCTGGGGAAGGCAGTGTGGCAGCTGAACAAAGAACAGAGGAGGTAGGAAAAGCATGTGAAAATAAGAATGGTGTAACAGAGGATGAGGCACCAGAGAAGAAGGAAGATATTGAAAAGGTTAGTGGCTGTGATGGGAGCTTTTTTGATTGTAATGTCTGTTTGGAGATGGCCAGGGATCCTGTAGTGAGTTGTTGCGGTCATTTGTTTTGTTGGCCTTGCCTCTATCAATGGCTGCATGTTCATTCAGATGCAATGGAATGTCCAGTTTGCAAGGGCGAGGTGAGTATAAAAAATGTTATCCCAATATATGGTCGTGGAAACAATGTCCCTGGTCCGGAGGAGGATCCCACTCTCAAAATCCCTCTCAGGCCCCATGCAAGGCGTGTTGAGAGTTTGAGACAGACCATTCACAGAACTGCATTTACACTCCCTGTGGAGGAGATGATTTGGCGTCTTGGAGGTAGATTTGATCTCACTCGGGATTTAGTTCAGCCGCACGAGCTTCACAGTGCGCGTGAAGCGGCAGAGAGAACTGCGCGTGAAGCAGAAGCAGCGGAGAGAACTAGTACCCTTCTTAACAGGTTGTTGGCATCTCGAGGAATTCGGAGAGATCCACCCCAAAATGATGCAATGGATGTAACACAGAACAACATGGCTGGTGTTGAGACAAGGGATAACCGCAGGCTTCAATCCCTTTTGCTTCGAAGAACACAATCGAATAGAACACCACTTTCTGCTCTGCCATCAGCTGAGAGGTTAGTGGAGGCATACTTTCGTAGCCATCCAATTGGTAGAAACCAAGAACAGCCTCCACTGGGAGATGACAGAGATTCCGTTTCCAGCATTGCTGCTGTTATAAATCCAGAGACTCAAGTGGACACTGCTGTAGAAATTGATTCTTTTGTATCCTTGTCAGCATCATCTTCCAGGAGAATTTCTGATGTGGATACTGGAGATTCTCCTGCTCCGAGGCGTAGACGTTTGAACTGA 1446 0.4765 MRNPIQHEYKPLVKVMGSYFITTVHFHLQSEITWRVGPSFSSTPPSAITSHNPDIHVVMGEEISDAMNLELNLGLGPEPPPSSVNLDDLFEGPLRRFSEAVRVRARQQRRWRRDLIPAEDRLHFHMPLESQNISMVELNQLVRNPVNESALEAGEGSVAAEQRTEEVGKACENKNGVTEDEAPEKKEDIEKVSGCDGSFFDCNVCLEMARDPVVSCCGHLFCWPCLYQWLHVHSDAMECPVCKGEVSIKNVIPIYGRGNNVPGPEEDPTLKIPLRPHARRVESLRQTIHRTAFTLPVEEMIWRLGGRFDLTRDLVQPHELHSAREAAERTAREAEAAERTSTLLNRLLASRGIRRDPPQNDAMDVTQNNMAGVETRDNRRLQSLLLRRTQSNRTPLSALPSAERLVEAYFRSHPIGRNQEQPPLGDDRDSVSSIAAVINPETQVDTAVEIDSFVSLSASSSRRISDVDTGDSPAPRRRRLN 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1268 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 257 IPR013083 -
Glsi11g1268 481 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 176 326 IPR045103 GO:0005783|GO:0006511|GO:0061630
Glsi11g1268 481 SMART ring_2 202 242 IPR001841 -
Glsi11g1268 481 SUPERFAMILY RING/U-box 198 255 - -
Glsi11g1268 481 Coils Coil 320 340 - -
Glsi11g1268 481 CDD RING-HC_AtRMA-like 200 243 - -
Glsi11g1268 481 Pfam Zinc finger, C3HC4 type (RING finger) 202 242 - -
Glsi11g1268 481 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Glsi11g1268 481 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Glsi11g1268 481 MobiDBLite consensus disorder prediction 459 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1268 Glsi-ChrGlsi11 7980300 7982442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1268 59 472 C3H Transcription Factor Family AT3G58030 49.889 7.47e-125 369