Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1266 ATGGTCATTCAAATCGACGGAGTTTCCCTTGAATACGCAACCGTGGTTTCCTCGAAAACTGCAATTGCGAAGGAGTTGGTTGGTTGGGGGAAGGGAAGCATGGATATGGCAACGTTGGATAAACATAACCAAAGTGTCTGGGCGTCTGGCTCGTCAATACTCAACACATCAAAGCCTAGACCTTGTGTGGAAGTGAACATGGAGCTGGCATTGAGCTTAGGACACGCACCAAAGCCCTTCTCTCTCTTTGACAAGCCTCCAACAATGCCCAACAAGGATCCTGGTTTCACCGGAATACCTGCAGAAGGCGATGATGAGAGGAGGGGTTCATCAGATCCGCCTCTTCAGCTCGACCTCCTTCCTTTCGCACCTGTTCCTAGACCCCGCCCATCTTCGCACCCTCGAATCCCTTGGCTCTCCGATGCGCGTAAAGTGGGCATTCAACCAAGGGCGGGGGCTGCAGTTGAGGACGCGGACCATGTTACTGCAGGGTCGTCCCCTAACAGTAACAGCGCATCATCGTTTCAGATGGACTTCTGTATCTGGAATAGTAACGAAAGCGGAAACAAGAAAGAGCACGAGTGTGAGGCTGATCAAAGAGGGAGCGATGATGAAGAAAACGGATCAACTCGCAAGAAACTCAGACTCTCTAAGCAACAATCAGCTTTCCTCGAAGAGAGCTTCAAACTACACCCCACTCTCAATCCAAAGCAGAAAGTTGCTCTGGCAAAATATTTAAACCTTCGTCCTCGTCAGGTAGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTAGATTGTGAGTATCTAAAGAGATGCTGTGAGACACTGACAGAGGAGAATAAGAGGTTGCATAAGGAGCTGCAAGAGCTGAGGGCTCTCAAAACGACTCAGCCATTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGCCCCTCTTGTGAACGGGTGGCTACAAACTCATCCTCTGCATTACCCGTCACCACCCCAAACCAATCTACCTCCGTCACTACTTCCCACGACGCTTCTCCAGTCCCGCCCCTCGTGTCTCTCACCAAAACTACAGTAGTCCCCTTCGATAAAGGTGAAGACCACGCGCAGCAGGACTAA 1131 0.5049 MVIQIDGVSLEYATVVSSKTAIAKELVGWGKGSMDMATLDKHNQSVWASGSSILNTSKPRPCVEVNMELALSLGHAPKPFSLFDKPPTMPNKDPGFTGIPAEGDDERRGSSDPPLQLDLLPFAPVPRPRPSSHPRIPWLSDARKVGIQPRAGAAVEDADHVTAGSSPNSNSASSFQMDFCIWNSNESGNKKEHECEADQRGSDDEENGSTRKKLRLSKQQSAFLEESFKLHPTLNPKQKVALAKYLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLHKELQELRALKTTQPFYMQLPATTLTMCPSCERVATNSSSALPVTTPNQSTSVTTSHDASPVPPLVSLTKTTVVPFDKGEDHAQQD 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1266 376 SMART halz 267 310 IPR003106 GO:0006355|GO:0043565
Glsi11g1266 376 MobiDBLite consensus disorder prediction 191 213 - -
Glsi11g1266 376 CDD homeodomain 211 268 IPR001356 GO:0003677
Glsi11g1266 376 ProSitePatterns 'Homeobox' domain signature. 242 265 IPR017970 GO:0000981|GO:0006355
Glsi11g1266 376 MobiDBLite consensus disorder prediction 191 215 - -
Glsi11g1266 376 SUPERFAMILY Homeodomain-like 202 268 IPR009057 -
Glsi11g1266 376 MobiDBLite consensus disorder prediction 86 172 - -
Glsi11g1266 376 Coils Coil 280 303 - -
Glsi11g1266 376 Pfam Homeobox associated leucine zipper 267 301 IPR003106 GO:0006355|GO:0043565
Glsi11g1266 376 MobiDBLite consensus disorder prediction 327 355 - -
Glsi11g1266 376 CDD bZIP 258 299 - -
Glsi11g1266 376 ProSiteProfiles 'Homeobox' domain profile. 207 267 IPR001356 GO:0003677
Glsi11g1266 376 MobiDBLite consensus disorder prediction 119 133 - -
Glsi11g1266 376 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 103 343 - -
Glsi11g1266 376 SMART HOX_1 209 271 IPR001356 GO:0003677
Glsi11g1266 376 Gene3D - 215 265 - -
Glsi11g1266 376 Pfam Homeodomain 211 265 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1266 Glsi-ChrGlsi11 7970641 7975946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1266 203 324 Homeobox Transcription Factor Family AT4G37790 80.328 1.90e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi11g1266 Homeodomain 1.3e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2435 02 74410625 74412025 Glsi11g1266 11 7970641 7975946 CCT
Glsi11g1266 11 7970641 7975946 Glsi11g1266 11 7970641 7975946 ECH