Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1259 ATGTTGTGCTGCGGTGGTGTGGAGGAGGAGTTCGGTGGCCCACCTGCAAACCAATACAGTTCTGCGCCACCTGGAGGGGGTAACACATACGGTGGCGGAGGAGGAGATGAGAGAGGAGAGCCAAGGGGCAATCTTGTCAAGACTGGTGCTCCAATGAAAGAATTGTCAATTGAGATACCCGCTATACCATTGGACGAGTTAAATAGGTTAACAAGCAACTTTGGTTCGAAGGCTTTGATTGGAGAAGGTTCCTATGGACGGGTTTTCCATGCAAAGTTGAGAAGTGGGCAGGATGCAGCGATCAAAAAGTTGGATAACAGTTCTTCAGAACCAGACTCCGATTTTGCAGCCCAGTTATCTGTTGTTTCAAGACTAAAGCATGAGCATTTTGTGGAGTTGATTGGATATTGTTTGGAGGCAAACAACATAATTTTGGTCTATCAATATGCAAACCTGGGTTCTTTGCATGATATATTACATGGAAGGAAAGGTGTACAAGGGGCTGAACCTGGTCCAGTACTTAGCTGGCACCAGAGAGTAAAAATTGCATTTGGTGCAGCAAAAGGCCTCGAATTTCTTCACGAAAAGTGTCAGCCGTCCATAGTTCATCGTGATGTCAGATCCAGCAATGTCTTGCTGTTTGATGACTATACGTCCAAGATTGCCGATTTCAGCTTGACAAATCAGTCTTCTGACACAGCAGCTCGGCTACATTCAACTAGAGTATTGGGAACCTTTGGCTATCATGCTCCAGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGCGATGTTTACAGTTTTGGAGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAACCAGTCGACCATACAATGCCCAAAGGACAACAAAGTCTTGTAACTTGGGCAACTCCTAGGCTGAGTGAAGACAAAGTGAAACAATGTGTGGATCCTAAGTTAAACAATGACTATCCGCCTAAGGCAATTGCTAAGTTGGCAGCGGTTGCAGCCCTTTGTGTTCAGTATGAAGCTGACTTTCGGCCAAATATGACGATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATTCCAAACCGGCTGGCCCAGACTCTAATGCTTGA 1101 0.455 MLCCGGVEEEFGGPPANQYSSAPPGGGNTYGGGGGDERGEPRGNLVKTGAPMKELSIEIPAIPLDELNRLTSNFGSKALIGEGSYGRVFHAKLRSGQDAAIKKLDNSSSEPDSDFAAQLSVVSRLKHEHFVELIGYCLEANNIILVYQYANLGSLHDILHGRKGVQGAEPGPVLSWHQRVKIAFGAAKGLEFLHEKCQPSIVHRDVRSSNVLLFDDYTSKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPDSNA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1259 366 MobiDBLite consensus disorder prediction 12 45 - -
Glsi11g1259 366 FunFam PTI1-like tyrosine-protein kinase 3 151 360 - -
Glsi11g1259 366 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Glsi11g1259 366 SMART tyrkin_6 74 351 IPR020635 GO:0004713|GO:0006468
Glsi11g1259 366 Gene3D Phosphorylase Kinase; domain 1 44 149 - -
Glsi11g1259 366 PIRSF ILK 37 360 - -
Glsi11g1259 366 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 42 359 - -
Glsi11g1259 366 ProSitePatterns Tyrosine protein kinases specific active-site signature. 201 213 IPR008266 GO:0004672|GO:0006468
Glsi11g1259 366 Pfam Protein tyrosine and serine/threonine kinase 79 351 IPR001245 GO:0004672|GO:0006468
Glsi11g1259 366 ProSiteProfiles Protein kinase domain profile. 74 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1259 366 Gene3D Transferase(Phosphotransferase) domain 1 151 361 - -
Glsi11g1259 366 SUPERFAMILY Protein kinase-like (PK-like) 54 351 IPR011009 -
Glsi11g1259 366 FunFam Pti1 kinase-like protein 50 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1259 Glsi-ChrGlsi11 7926116 7928597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1259 65 354 Trihelix Transcription Factor Family AT5G38560 43.581 9.53e-85 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Glsi11g1259 PK_Tyr_Ser-Thr 3.3e-47 CL0016