Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1246 ATGGTGAGGAAGACATTGCCGTTGAGCAACGACGAGGAAGAAAATTGTTGCAGAGCTATTATGATATTGCCACCGAGGAAGAAGACGATGACAGTGCTGAAAGTGAGGACTCCTAAAGATTATAATGTCAACGAAGCACCTGAAGATAGCACTATGAGAAGTTCCTGGGCAGATTCTGCCGACAATTCAGTCATTGGTTTTTCAGATACCAATGCTGTAACTCGCCCTCCCAGGTCAACATACGTTCCACCACATCTTCGTAATAGGCCACCATCTTCGGAATCGACTGTAACTTCACACTCATCTTCTTTAACGGCTAATGATCGGGTAAATTATAGTGGGCCATCTGCTGGTAATCAGGGTGGCAGTTCCTGGAAGCCTGATAGTGGGCGGCAGGGATATGGTTCTAGTGGTCGAACTGGTGGTGGAGGGCGGGACCGTGGAAGGGAGTGTGAAGTTAATCCTTTTGGGGACAATGACGCGACAGATCAAACTTTTAGTGAGCAAGAAAGCACAGGCATTAACTTTGATGCTTATGATGATATTCCTGTGGAGACCAGCGGGGAGAATGTGCCTCCGCCAGTAAATACATTTGCACAAATAGACTTGGGCGAGGCATTGAATCAAAATATACGACGGTGCAAGTATGTCAAACCAACTCCAGTTCAGAAATATGGCATACCAATTTCTCTTGCCGGGCGAGATTTGATGGCTTGTGCTCAGACAGGGTCAGGCAAGACAGCTGCTTTTTGCTTTCCTATTATAAGCGGAATCATGAGGGAGACATACGTTCAAAGACCCCGAGTAGCGCGGACTGCTTTCCCTTTGGCACTTATTTTCTCCCCCACCAGGGAACTTTCATGTCAGATACATGATGAGGCAAGAAAATTTTCCTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCACCAATTAATCAACAGCTGCGGGAGCTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCAGGACGATTGGTAGATTTGCTTGAGAGGGCTAGGGTTTCATTGCAGATGATCAAATATCTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGGAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGTGTGAGACAGACAATGCTGTTTAGTGCCACTTTTCCCAGAGAGATACAGAGACTTGCGTCAGATTTCCTTTCAAAATATGTGTTCCTGTCTGTTGGAAGGGTTGGTTCAATTACTGATCTAATTTCTCAAAGAGTAGAATATGTCCTCGAGTCTGACAAGAGAAGCCACCTTATGGACCTTCTTCACGCTCAGAGGGACAATGGAATTGATGGCAAGCTCTATGATAAGGATCTTTGGGTGGTTTTGCAGCAAAGTTTGACACTAGTTTTTGTGGAAACAAAGAAAAGAGCTGATTTACTGGAACACTGGCTGTGTGTCAATGGGTTTCCTGCAACTAGCATTCACGGTGACAGAACACAACAGGAAAGAGAACTAGCATTGAGGTCATTCAAAAGTGGGAAGACACCAATTTTAGTGGCAACAGATGTGGCAGCACGTGGTCTTGACATTCCACGTGTAGCTCATGTGGTAAATTTTGATTTTCCGAATGACATTGATGACTATGTGCACCGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGCAACAGCCTTTTTTAATGACAATAATTTGTCATTGGCTAGGCCGTTGGCTGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCATGGCTTACACGATTTGCAGCCAGAGCTTCTTTTGGTGGTGGCAACCGAAATAGGCGGTCTGGAGGCGGAGGAGCCCGTTTTGATGGCCGCGATTTTAGAAAGGACGGCTCATTTAATAAAGGAACACCAACAGATTATTATGGTGGAACAGGTGGATATGGGGTTCCTGCCAGTTGTGGGGGAGGGTATGATCCTGGTATAACCAGTGCTTGGGATTAA 2001 0.4563 MVRKTLPLSNDEEENCCRAIMILPPRKKTMTVLKVRTPKDYNVNEAPEDSTMRSSWADSADNSVIGFSDTNAVTRPPRSTYVPPHLRNRPPSSESTVTSHSSSLTANDRVNYSGPSAGNQGGSSWKPDSGRQGYGSSGRTGGGGRDRGRECEVNPFGDNDATDQTFSEQESTGINFDAYDDIPVETSGENVPPPVNTFAQIDLGEALNQNIRRCKYVKPTPVQKYGIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRETYVQRPRVARTAFPLALIFSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPREIQRLASDFLSKYVFLSVGRVGSITDLISQRVEYVLESDKRSHLMDLLHAQRDNGIDGKLYDKDLWVVLQQSLTLVFVETKKRADLLEHWLCVNGFPATSIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPRVAHVVNFDFPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSLARPLADLMQEANQEVPAWLTRFAARASFGGGNRNRRSGGGGARFDGRDFRKDGSFNKGTPTDYYGGTGGYGVPASCGGGYDPGITSAWD 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1246 666 FunFam Probable ATP-dependent RNA helicase DDX4 158 413 - -
Glsi11g1246 666 MobiDBLite consensus disorder prediction 66 169 - -
Glsi11g1246 666 Pfam Helicase conserved C-terminal domain 465 561 IPR001650 -
Glsi11g1246 666 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 163 600 - -
Glsi11g1246 666 FunFam ATP-dependent RNA helicase RhlB 414 604 - -
Glsi11g1246 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 577 IPR027417 -
Glsi11g1246 666 MobiDBLite consensus disorder prediction 617 632 - -
Glsi11g1246 666 CDD DEADc_DDX3_DDX4 197 417 IPR044763 GO:0003724|GO:0005524
Glsi11g1246 666 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 196 224 IPR014014 GO:0003724
Glsi11g1246 666 Gene3D - 414 604 IPR027417 -
Glsi11g1246 666 MobiDBLite consensus disorder prediction 89 136 - -
Glsi11g1246 666 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 455 600 IPR001650 -
Glsi11g1246 666 SMART helicmild6 480 561 IPR001650 -
Glsi11g1246 666 MobiDBLite consensus disorder prediction 607 634 - -
Glsi11g1246 666 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 411 IPR014001 -
Glsi11g1246 666 SMART ultradead3 215 426 IPR014001 -
Glsi11g1246 666 Pfam DEAD/DEAH box helicase 220 400 IPR011545 GO:0003676|GO:0005524
Glsi11g1246 666 Gene3D - 152 413 IPR027417 -
Glsi11g1246 666 CDD SF2_C_DEAD 423 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1246 Glsi-ChrGlsi11 7848098 7853064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1246 194 593 Eukaryotic Initiation Factors Gene Family AT3G19760 30.521 2.60e-60 206