Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1245 ATGTACGTCCTTCTCTCCGTTCTGTCCTCGTTCCAGCCATTCGCTTATTACACCACGCGCCCTCCCCCCTTCCGATTTCCTCTTTCTTTCGTCCACTTCCACTCTGGACACTGCGAGCTGCTAGAGAAGGACACCGGAGAATCTTCATCTAGTGTTAGGGTTTGCCCTAATAGGGATATTGCTCACTGGGTTCTGATTGAGCGAAGGAGCAAGATGGGTGTCAATTCGCTGCCTTCGGAGTCGAGCCACGATCTCGATGAGCAGATCTCACAGCTCATGCAGTGCAAGCCACTTTCAGAGCAACAGGTTAGAGTTTTATGCGAGAAGGCAAAGGAGATTTTAATGGATGAAAGTAATGTTCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGTGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACTAACTACTTGTTTATGGGAGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTGACACTCCTTGTGGCACTGAAAGTGCGGTATCCTCAGCGGATTACTATTCTTCGAGGAAACCATGAAAGCCGTCAGATTACTCAAGTATATGGATTTTATGATGAATGCCTAAGAAAGTATGGTAATGCCAATGTTTGGAAGATCTTTACAGACCTTTTTGATTACTTTCCATTGACTGCATTGGTTGAATCTGAAATATTTTGTTTGCATGGTGGACTGTCACCTTCAATTGAAACCCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTGTTATGGTCTGACCCAGATGACAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAGTTCAATCATACAAACAGCCTTAAGTTGATTGCTAGAGCTCATCAGCTTGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATATTTAGTGCACCTAACTACTGTTATCGATGTGGGAACATGGCTTCTATATTGGAGGTTGATGATTGCAAGGGCCACACATTTATCCAGTTTGAACCGGCTCCTAGACGAGGAGAACCAGATGTCACCCGTAGGACACCTGATTACTTCTTATAA 1155 0.4416 MYVLLSVLSSFQPFAYYTTRPPPFRFPLSFVHFHSGHCELLEKDTGESSSSVRVCPNRDIAHWVLIERRSKMGVNSLPSESSHDLDEQISQLMQCKPLSEQQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1245 384 CDD MPP_PP2A_PP4_PP6 84 368 - -
Glsi11g1245 384 PRINTS Serine/threonine phosphatase family signature 188 212 IPR006186 GO:0016787
Glsi11g1245 384 PRINTS Serine/threonine phosphatase family signature 223 249 IPR006186 GO:0016787
Glsi11g1245 384 PRINTS Serine/threonine phosphatase family signature 155 182 IPR006186 GO:0016787
Glsi11g1245 384 PRINTS Serine/threonine phosphatase family signature 330 346 IPR006186 GO:0016787
Glsi11g1245 384 PRINTS Serine/threonine phosphatase family signature 126 153 IPR006186 GO:0016787
Glsi11g1245 384 PRINTS Serine/threonine phosphatase family signature 252 279 IPR006186 GO:0016787
Glsi11g1245 384 PRINTS Serine/threonine phosphatase family signature 308 328 IPR006186 GO:0016787
Glsi11g1245 384 SMART pp2a_7 98 368 IPR006186 GO:0016787
Glsi11g1245 384 FunFam Serine/threonine-protein phosphatase 78 384 - -
Glsi11g1245 384 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 83 384 IPR047129 GO:0004722
Glsi11g1245 384 SUPERFAMILY Metallo-dependent phosphatases 80 369 IPR029052 -
Glsi11g1245 384 ProSitePatterns Serine/threonine specific protein phosphatases signature. 189 194 IPR006186 GO:0016787
Glsi11g1245 384 Pfam Calcineurin-like phosphoesterase 126 317 IPR004843 GO:0016787
Glsi11g1245 384 Gene3D - 78 384 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1245 Glsi-ChrGlsi11 7838555 7845470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1245 90 314 Calmodulin-binding Proteins AT5G63870 34.457 3.61e-32 121