Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1241 ATGTGGATCACTACGATAACGTGCCTTGATATGAATGGTGATCATGGGAGATCCTCACAGCAGTTCCTGAGGCCGCATCACCAAGACAAAGCCGACCCTGAAAGAAGGCGAATCAGAGAACACAGATTAGGATCAAAGCTTTACCCTCTCCGTCTGCGACAGTGGTACGTTTTGCCGATCGTGTTGAACGTTGAAGGTGAGTACTATTGCAACATGAGGGGCAGAAGCTACAGTTACAGTCCCTCACCTTCAAGGGGTTACAGAAGACGATACCGCAGTCCTAGCCCCAGGGGTAGGTATGAAGGCCGTGGCAGGGATTTGCCAACAAGTCTTCTGGTTCGGAACCTCCACAGAGATTGCAGGGCAGAAGATCTGCGTGGACCTTTTGGCCACTTCGGTCCTCTCAAGGACATTTATCTGCCTCGAGATTATTATACTGGGGAACCACGTGGTTTTGGATTTGTCCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGATGGTCAAATCCTACTTGGTCGTGAATTGACTGTGGTGTTTGCTGAGGAGAACAGAAAGAAGCCTGCAGAAATGAGGGCAAGACAACGCGTTAGGAGTCGCTCATATGATCGTAGGAGGTCTCCACCTCGTTATTCTCGCTCCCCACGCTATGTTCGATCATATTCTCGTAGTCCAGAGTACTCACCTCCAAGACGAAGACGTTATTCCAGGTCAATATCACCAAGAGACGGAAGGTATAGGGAGCGTTCATACTCGAGATCACCTTACGACTCAAGAAGCCGTAGTCAAAGCAGGAGCTTCAGCAGGAGCAGGAGTCGAAGTCTAGACTACTCAAGGTGA 852 0.4941 MWITTITCLDMNGDHGRSSQQFLRPHHQDKADPERRRIREHRLGSKLYPLRLRQWYVLPIVLNVEGEYYCNMRGRSYSYSPSPSRGYRRRYRSPSPRGRYEGRGRDLPTSLLVRNLHRDCRAEDLRGPFGHFGPLKDIYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRARQRVRSRSYDRRRSPPRYSRSPRYVRSYSRSPEYSPPRRRRYSRSISPRDGRYRERSYSRSPYDSRSRSQSRSFSRSRSRSLDYSR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1241 283 SUPERFAMILY RNA-binding domain, RBD 109 214 IPR035979 GO:0003676
Glsi11g1241 283 Gene3D - 101 221 IPR012677 -
Glsi11g1241 283 MobiDBLite consensus disorder prediction 79 104 - -
Glsi11g1241 283 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 26 280 - -
Glsi11g1241 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 180 IPR000504 GO:0003723
Glsi11g1241 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Glsi11g1241 283 MobiDBLite consensus disorder prediction 189 214 - -
Glsi11g1241 283 MobiDBLite consensus disorder prediction 260 283 - -
Glsi11g1241 283 MobiDBLite consensus disorder prediction 189 283 - -
Glsi11g1241 283 MobiDBLite consensus disorder prediction 230 259 - -
Glsi11g1241 283 SMART rrm1_1 110 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1241 Glsi-ChrGlsi11 7813004 7816173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1241 74 172 Eukaryotic Initiation Factors Gene Family AT3G11400 34.906 4.60e-08 51.6