Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1235 ATGGCTTCAAGATTCTGGACCCAGGGCGGTAGTGACTCTGAGGAGGAGGAGAGTGACTATGATGAAGACATTGAGAATGTAGCAGGTGAAGCTGCTAATCAAACTGTTAAAAGCAGATACTTGCAAGGAAATGCCAGTGATAGTGATGACTCGGATGGCCAAAAGCGTGTTGTTAGGTCAGCAAAAGACAAGCGGTTTGAAGAGATGTCTTCTACCATAGACCAGATGAAGAATGCTATGAAGATTAATGATTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATAAACAAACAACTTGAGAAAGTCATGCGTGTCACTGAGTCTGAGAAGGTCCCCACTCTTTACATTAAGGCGCTTGTGATGTTGGAAGACTTCTTGGCTCAGGCTTTGGCAAATAAGGATGCCAAAAAGAAGATGAGTAGTAGTAATGCTAAAGCCTTGAACTCAATGAAGCAGAAATTGAAGAAGAATAATAAGCAATATGAGGATCTGATTAATAAATATAGGGAAAATCCTGAGAGTGAAGAGGACAAAGATGAAGAGGAGTCAGAGGAAGAGGATGAAAGCGAGGAGGAGGTCATTGAGGAGCTTGAGAAGATGCAAAAGTCAGATTCTGAAGATGGTGATCATGAAGATGACAGGTCAGATGCCATGGAAACACCTTGGGACCAAAAACTTAGCAAGAGAGACAGACTTTTGGATAGGCAATTTATGAAAGACCCTAGTGAGATCACTTGGGACATGGTTAACAAGAAGTTCAAAGAGGTTGTGGCAGCTAGGGGCAGGAGGGGAACTGGAAGGTTTGAACAGGTCGAGCAACTTACCTTCTTGACAAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATTTTTTTTAGTGTTGTTTCTGCTCAATTTGATGTTAATCCTGGTTTAAATGGGCATATGCCTATAAATGTGTGGAAAAAATGTGTACAAAACATGTTGGTCATTCTTGATATTCTAGTGCAGTACCCAAACATAGTTGTTGATGATACAGTGGAGCCTGATGAGAATGAAACTCAGAAAGGGCCTGACCATAATGGTTCAATTCGGGTTTGGGGGAACTTAGTTGCATTCCTGGAAAGAATAGATGCTGAGTTTTTCAAGAGCTTGCAATGCATTGATCCTCATACACGTGAGTATGTTGAGAGACTTAGGGATGAACCAATGTTTCTGGCTCTTGCTCAGAATGTCCAGGAATATCTTGAGAGGGTTGGGGATTTTAAAGCTTCTTCTAAGGTAGCCCTTAGACGGGTTGAACTCATCTATTATAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCTGACAGAAGATGCAGGAGAGGTAGACGAGGAGTCTAAAGGGTTTGAGGAAACAAGGATTCCTACTGCATTTGTTGTTACTCCTGAGCTTGTGCCTCGAAAACCCACTTTTCCAGACAATAGCAGGAGCCTAATGGATTTATTGGTGTCCCTGATATACAAATTTGGGGATGAGCGGACTAAGGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTCGATGAGTTCGCAACAGCCCGTGATCTGCTGCTTATGAGCCATTTGCAAGATAGTGTTCAGCATATGGATATATCAACACAGATACTTTTTAACAGGGCTATGTCGCAGCTGGGTCTATGTGCTTTTCGGATTGGGCTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTTTATTCTGGTGGAAGGGTGAAGGAGCTGCTTGCGCAGGGTGTCTCACAAAGTCGCTATCATGAAAAGACTCCGGAACAGGAAAGATTGGAAAGGAGACGTCAGATGCCATATCATATGCACATCAACCTTGAGCTCCTGGAGGCAGTGCATCTTATATGTGCTATGCTACTAGAAGTCCCTAACATGGCAGCTAATGTTCATGATGCAAAGCGCAAGGTCATTAGTAAGACCTTCCGTCGCCTGCTTGAGGTTAGTGAGAAGCAGACATTTACAGGTCCACCTGAAAATGTCAGGGATCATGTCATGGCTGCTACAAGGGCTCTTAGCAAGGGAGACTTCCATAAGAGTTTTGACGTTATCAACTCTCTGGATGTCTGGAAATTTGTTAGAAATTGTGATAATGTGCTAAAAATGCTCAAGGAAAAGATTAAGGAGGAGGCGCTAAGGACCTACCTATTTACCTTTTTCTCATCCTATGATTCTTTGAGCTTGGAGCAACTCACTAAAATGTTTGACCTCTCTGATGGTCACACCCATAGCATTGTTAGTAGGATGATGATCAATGAGGAACTCCATGCAAGCTGGGACCAACCAACTGGGTGCATTATTTTCCAGGATGTTGAGTACTCTAGGTTGCAGGCTTTGGCATTCCAGCTGACAGAGAAGTTATCTATCCTTGCAGAGAGTAATGAAAGAGCAACAGAGGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTTTAAGGCGGCGAGACGGCCAGGACTATGCTTCTGCTGCTGCAACAGCTACTGTAGGTGGTAGGTGGCAAGACTTGTCCCTTACTCAGACAAGGCAAGGTGGTACTGGACGTGCAGGATATAGTATTGGTGGCGGAAGGCCATTCTCATTGAACCAAAACACTGGGAGTGGCTATTCACGGGACCGAATGGGAAGAGGAACAGGTGCAGGCTATCAGAGTACAAGATATCAAGATGCTGCATATGGTGGATCAGGGAGGACAACAGCTTTGAGGGGAGCCCAGATGGATACATCTACTCGTATGGTTAGCCTCAAGGGAGTTCGTGCTTAA 2799 0.4412 MASRFWTQGGSDSEEEESDYDEDIENVAGEAANQTVKSRYLQGNASDSDDSDGQKRVVRSAKDKRFEEMSSTIDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKYRENPESEEDKDEEESEEEDESEEEVIEELEKMQKSDSEDGDHEDDRSDAMETPWDQKLSKRDRLLDRQFMKDPSEITWDMVNKKFKEVVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEIFFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQYPNIVVDDTVEPDENETQKGPDHNGSIRVWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPMFLALAQNVQEYLERVGDFKASSKVALRRVELIYYKPQEVYDAMRKLAELTEDAGEVDEESKGFEETRIPTAFVVTPELVPRKPTFPDNSRSLMDLLVSLIYKFGDERTKARAMLCDIYHHALLDEFATARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRALSKGDFHKSFDVINSLDVWKFVRNCDNVLKMLKEKIKEEALRTYLFTFFSSYDSLSLEQLTKMFDLSDGHTHSIVSRMMINEELHASWDQPTGCIIFQDVEYSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYASAAATATVGGRWQDLSLTQTRQGGTGRAGYSIGGGRPFSLNQNTGSGYSRDRMGRGTGAGYQSTRYQDAAYGGSGRTTALRGAQMDTSTRMVSLKGVRA 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1235 932 MobiDBLite consensus disorder prediction 49 68 - -
Glsi11g1235 932 Coils Coil 144 171 - -
Glsi11g1235 932 MobiDBLite consensus disorder prediction 134 225 - -
Glsi11g1235 932 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 860 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Glsi11g1235 932 ProSiteProfiles PCI domain profile. 614 786 IPR000717 -
Glsi11g1235 932 MobiDBLite consensus disorder prediction 869 883 - -
Glsi11g1235 932 MobiDBLite consensus disorder prediction 856 894 - -
Glsi11g1235 932 MobiDBLite consensus disorder prediction 195 225 - -
Glsi11g1235 932 MobiDBLite consensus disorder prediction 31 48 - -
Glsi11g1235 932 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 46 646 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Glsi11g1235 932 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 715 803 IPR000717 -
Glsi11g1235 932 MobiDBLite consensus disorder prediction 1 68 - -
Glsi11g1235 932 Coils Coil 180 200 - -
Glsi11g1235 932 MobiDBLite consensus disorder prediction 135 154 - -
Glsi11g1235 932 MobiDBLite consensus disorder prediction 155 174 - -
Glsi11g1235 932 Pfam PCI domain 654 782 IPR000717 -
Glsi11g1235 932 MobiDBLite consensus disorder prediction 175 194 - -
Glsi11g1235 932 MobiDBLite consensus disorder prediction 12 26 - -
Glsi11g1235 932 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 927 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Glsi11g1235 932 SUPERFAMILY "Winged helix" DNA-binding domain 711 785 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1235 Glsi-ChrGlsi11 7745844 7749967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1235 1 932 Eukaryotic Initiation Factors Gene Family AT3G56150 69.403 0.0 1223