Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1233 ATGGGAATTGGGAAGGCCGTCCCCACCCCATCTTACTACTGCATAGAAAGAAGAGTGCAGACATTAAAGCCCCTGTTAGTTATAGTCACAAAAAGATGGAAAGATCCTTGTCCATATGCTGATTTTGATGGTCCCTTGGAAGCTATTCTTTCTAGATCTATCAATTTTTGGCTTGAAGATATAAAGCATCCTTTCCGATCAGTCAGTTTCAATTGTCGTTCAGAGAAGATGATGCTTGAAGGATCACTTAGCTTTAAGGGCCACGAGTTGGAGACAATTTTCTATTTTAGTACTCCAACAGCAGAGATGAAAAATAACATCTTTGGTAAACCAGAAAGCACAAAAAACATCGACAGTTTTGATCATTTGTCCAGATCATATAGTAACTTGTCCGAGAAGAACTTGCATTCGCCATTGCCAGAGCCAGAGAGTCAAAGAGACCGAGCTGCATTAAGGTTACAGAAAGTTTACAAAAGTTTCCGAACAAGGAGGCAGCTAGCAGATTGTGCCGTTCTTGCAGAGCAGAGATGGTGGAAGGTGCTGGATTTTGCTGAGCTAAAGAGGAGTTCCATATCATTTTTTGACATTGAGAAACCGGAAAGTGCCCTTTCACGTTGGTCAAGGGCGAGAAAGAGAGCTGCAAAGGTTGGAAAGGGTCTATCTAAGGATGAGAAGGCTCGTAAACTTGCTTTGCAGCACTGGCTAGAAGCAATTGATCCTCGGCATCGCTATGGCCACAATCTTCAATTTTATTATGTCAAATGGCTCCACAGTCACAGCAACCAACCCTTCTTCTATTGGCTTGATATTGGGGAAGGCAAGGAAGTCAGTCATGAGAGATGCCCAAGATCAAAGCTTCAGCAGCAGTGCATCAAGTATCTGGGTCCAGTGGAAAGAACGGCTTATGAAGTAGTAGTTGAGGATGGGAGGCTCTTCTACAAGCAGAGTGGGAAATCTGTAGAGACAACTGGAGATGCTAAGTGGATTTTTGTACTGAGTGCATCCAAGACTTTGTATGTTGGACAGAAGAACAAGGGCACATTTCAACATTCAAGCTTCTTGGCAGGTGGAGCCACATTGTCTGCTGGAAGATTAGTGGTGGAAGATGGTGTTCTTAAGGCGGTTTGGCCTCACAGCGGGCATTATCTCCCAACAGAAGAAAATTTCCAGGAATTAATGTCATTCCTTAAGGAGCATAATGTGGATCTAACAGATGTAAAGAAAAGCCCAAGTGAAGATGAAGAAGAAGATATAACCAGAAACAAGAAGGATCTTCTCTTCCGAGGCAATCCTTCAGATGCAGAGCTACCTCAAAATATTGAAACCGAAAGTTCCACCATATTATCACAAGACATATCTGACTCAAATGAGGATTCTAATGCTGAGTCAAAATCTCGTCTACCCTCGTCAAGATTGTCCAGAAGAATAGGATCAAACATAGCCAGACTTGAAATACCAAAGAGAGCCAATGTGTCTGCCATTTTCGGGAAGCAAGAAGATCCGCCAAGTTGCCATTTTCAAACTCCAGATTCATGCTCAGAAGATGGTTATGAGACAGCAGAAGAATCATTCATTGACGAGGAGGAATTTATGGTTATGAAGTCGAACTTGTTTGTTAAAGATCAAGAGGAAGAAGAAGATGGAAGCCCAGTTCCGAAAGAGAAAATAATGAAGAGGATAGATTCACACAAGGGAATGAACTCATATCAGTTGGCCCATCAATTAAGTAAAACCTGGACAACAGGTGCAGGTCCGCGTATTGGTTGCATGAGAGACTACCCTTCAGAGTTACAGTTTCGAATTCTGGAGCAGCAAAATTTGTCTCCAAGGAAACGAACTCCTGCTGCATCTCCCCGGACCACGTCCCTGTCTCGCTTCACCCAAAGGATGGAGTCTCAAGTGAAGCATGCCGTGGTTGTTAAAGTCATGGGTCGCACTGGATCCCGAGGGCAGGTGACTCAGGTTAGAGTCAAGTTTTTGGATGATCATAACCGTTACATCATGAGGAATGTGAAAGGACCAGTGAGAGAAGGAGATATTCTCACCCTACTCGAGTCTGAAAGGGAGGCTAGAAGGTTGCGCTAG 2085 0.436 MGIGKAVPTPSYYCIERRVQTLKPLLVIVTKRWKDPCPYADFDGPLEAILSRSINFWLEDIKHPFRSVSFNCRSEKMMLEGSLSFKGHELETIFYFSTPTAEMKNNIFGKPESTKNIDSFDHLSRSYSNLSEKNLHSPLPEPESQRDRAALRLQKVYKSFRTRRQLADCAVLAEQRWWKVLDFAELKRSSISFFDIEKPESALSRWSRARKRAAKVGKGLSKDEKARKLALQHWLEAIDPRHRYGHNLQFYYVKWLHSHSNQPFFYWLDIGEGKEVSHERCPRSKLQQQCIKYLGPVERTAYEVVVEDGRLFYKQSGKSVETTGDAKWIFVLSASKTLYVGQKNKGTFQHSSFLAGGATLSAGRLVVEDGVLKAVWPHSGHYLPTEENFQELMSFLKEHNVDLTDVKKSPSEDEEEDITRNKKDLLFRGNPSDAELPQNIETESSTILSQDISDSNEDSNAESKSRLPSSRLSRRIGSNIARLEIPKRANVSAIFGKQEDPPSCHFQTPDSCSEDGYETAEESFIDEEEFMVMKSNLFVKDQEEEEDGSPVPKEKIMKRIDSHKGMNSYQLAHQLSKTWTTGAGPRIGCMRDYPSELQFRILEQQNLSPRKRTPAASPRTTSLSRFTQRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1233 694 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM3 78 620 IPR044159 -
Glsi11g1233 694 MobiDBLite consensus disorder prediction 435 472 - -
Glsi11g1233 694 MobiDBLite consensus disorder prediction 406 429 - -
Glsi11g1233 694 SUPERFAMILY Nucleic acid-binding proteins 630 694 IPR012340 -
Glsi11g1233 694 Gene3D - 628 694 IPR012340 -
Glsi11g1233 694 MobiDBLite consensus disorder prediction 406 472 - -
Glsi11g1233 694 Pfam Ribosomal protein S28e 633 693 IPR000289 GO:0003735|GO:0005840|GO:0006412
Glsi11g1233 694 FunFam 40S ribosomal protein S28 627 694 - -
Glsi11g1233 694 MobiDBLite consensus disorder prediction 607 628 - -
Glsi11g1233 694 CDD S1_S28E 635 694 IPR000289 GO:0003735|GO:0005840|GO:0006412
Glsi11g1233 694 ProSitePatterns Ribosomal protein S28e signature. 685 693 IPR028626 -
Glsi11g1233 694 Hamap 30S ribosomal protein S28e [rps28e]. 630 694 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1233 Glsi-ChrGlsi11 7723384 7731677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1233 630 694 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 1.49e-32 118