Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1224 ATGCTTGGCTTCAAGAGCTTCTTTTGCCGTACTAGAAGGAAAAATAAAAAGAACAGAAACAAGCGCAACCTCAAAAGCCATATCGCTATCAGCAAGCAAAAATGCATTTCCCTTAAAAATGAGTCACCAGACCAAGAGGAATGTGAAGTAATAGAAAATACTGAAGAGGGTTTCAGGCTCAAAAGTTCTGCCCTATCACACGCGTATGATGTTCAACCTTTGGGTAATCTTTATCTCAATCCAGGCTCTATCAACTCCAGAGATACAGGTTTAGGTAATCTCCACACCCTAACAGATGAGCTAGTTCTCGAAATTTTGGGGTTGTTGGATGGCACCGACTTGGGGATTTTGGCGACTGTGAGCAAGTCTTTTTATGTTTTCACCAACCATGAACCCCTTTGGAGGAATCTTGTATTGGAAAATCTTAGTGGTGGATTTCGGTACAATGGGTCATGGAAATCTACATTTACAGGTGCTTACTACCCTTCATTTGATATCTTCAATATTACTGTTCAGAATTTGAAAGTGAGAGACTTTTATTCTGATTATCTTTTCCAAAGTTGGCTCTGTGCTAATCTTGAAATGAAAACCGAATGGCTGGAAAGAAATAATATAGTTCGAAAGAAGGTTATTTCAGTTGAAGAATTTGTAAAGAATTTTGAGGAGCCTAATAAACCGGTTTTGTTGGAAGGATGTCTTGATAATTGGGATGCATTGAAAAATTGGGATAGAGATTATTTGGTGCAATTGTGTGGTGATGTTAAATTTTCTGTTGGGCCAGTAGAGATGAAGCTTGAAGACTATTTTGGGTACTCGGATCAAGTGAGAGAAGAAAGACCATTGTATTTGTTTGATCCAAAATTTGCTGAAAAAGTTCCAACTTTGGGTTCACAATTTGAAGTTCCAGCTTACTTCGAGGAGGACTTGTTTAGTGTCTTGGGCAAAGGGAGACCTGACTATAGGTGGATTATTATTGGACCGGCTGGATCTGGATCATCTTTCCATGTTGATCCAAATTCGACTTCAGCTTGGAATGCAGTTATTAAGGGCTCCAAGAAGTGGGTATTATTTCCTCCTGATGTGATTCCACCAGGAGTTCATCCTAGCCCTGATGGTGCAGAGGTTGCATCTCCTGTCTCAATAATTGAGTGGTTCATGAACTTTTATGGTGCAACAAAAAGTTGGAAAAAGAAGCCTATTGAGTGCATCTGTAAAGCAGGGGAGGTTCTATTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACCTAGAGGAGTCCATAGCCATAACCCAAAATTATGTCAGTAGGAGAAACTTATTAAATGTCTTGGATTTTCTTAAAAGGCCAAATGCGAGCGTACTTGTATCTGGAACAAGAGATCGAGTGAATTTGTATGAGAAATTTAAAGACACCATCGAGGCTTCCTTTCCTGGAATAATTGAGGAACTGATCCTAAAAGAAGAAGAGAAAAAGATCCAGCAGAGAAAACTTTCCTTCTGGGATTCTGTCGCAGATTCCAAGGTGGGAGCTTTCAAGTTCTCTTTCTAG 1548 0.3973 MLGFKSFFCRTRRKNKKNRNKRNLKSHIAISKQKCISLKNESPDQEECEVIENTEEGFRLKSSALSHAYDVQPLGNLYLNPGSINSRDTGLGNLHTLTDELVLEILGLLDGTDLGILATVSKSFYVFTNHEPLWRNLVLENLSGGFRYNGSWKSTFTGAYYPSFDIFNITVQNLKVRDFYSDYLFQSWLCANLEMKTEWLERNNIVRKKVISVEEFVKNFEEPNKPVLLEGCLDNWDALKNWDRDYLVQLCGDVKFSVGPVEMKLEDYFGYSDQVREERPLYLFDPKFAEKVPTLGSQFEVPAYFEEDLFSVLGKGRPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWVLFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKSWKKKPIECICKAGEVLFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASVLVSGTRDRVNLYEKFKDTIEASFPGIIEELILKEEEKKIQQRKLSFWDSVADSKVGAFKFSF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1224 515 Gene3D Cupin 168 435 - -
Glsi11g1224 515 SUPERFAMILY F-box domain 89 156 IPR036047 GO:0005515
Glsi11g1224 515 FunFam F-box protein At1g78280 185 435 - -
Glsi11g1224 515 Gene3D - 87 163 - -
Glsi11g1224 515 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 91 513 - -
Glsi11g1224 515 ProSiteProfiles JmjC domain profile. 290 450 IPR003347 -
Glsi11g1224 515 SUPERFAMILY Clavaminate synthase-like 209 447 - -
Glsi11g1224 515 Pfam Cupin-like domain 214 433 IPR041667 -
Glsi11g1224 515 SMART fbox_2 97 137 IPR001810 GO:0005515
Glsi11g1224 515 ProSiteProfiles F-box domain profile. 91 137 IPR001810 GO:0005515
Glsi11g1224 515 SMART cupin_9 281 450 IPR003347 -
Glsi11g1224 515 Pfam F-box-like 99 139 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1224 Glsi-ChrGlsi11 7663226 7666070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1224 82 439 Glycosyltransferase AT1G78280 38.070 1.38e-77 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi11g1224 Cupin_8 5.8e-24 CL0029