Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1222 ATGGGCAACAACTGCGTAGGACCAAACCTTGGCAGGAATGGGTTCTTTCATTCGATTACTGCTGCTACTTGGAAAACCCGGCCACCGGAGGACAGGCTTCCCCCGCCTAACGCCGAAAACAAGAATGAAAGCGCGGCAAATGCAGGTTCCGATTCATTTAAATATTCGAATGCTGGAAAAGATTCTAATGCTCCAAAGTCAGTTGAAAGTACACCACCTGAGCCGGTGAAGATTATCAGTGTTGAAACGAAACCGCCGCAACCTGAAAAGTTTGTTAAGCCGGAGGTCAATGAGCCTGCCTCTAATACTGCTGATGCTGGGAAAGCTAAGAAACCTGCTCATATTAGAAGGGTATCGAGTGTTGGACTTCAAGTAGAATCGGTTTTAGGAGGGAAGACTGTGAATTTGAAGGATGTACATAGTTTGGGGTGGAAGCTTGGACAAGGACAGTTTGGGATGACTTTCCTTTGTGTAGAGAAGGCAACTGGAAAAGAATTTGCTTGTAAATCCATTGCCAAGAGAAAATTGGTCACGCAAGAGGATGTAGACGATGTTAGAAGGGAGATTCAGATAATGCACCACATGGTAGGTCACCCCAATGTGGTTCAAATAGTGGGTGCTTATGAGGACGTTGTTGCTGTCCATCTTATTATGGAACTTTGTGCTGGTGGGGAGCTCTTTGACAGGATCATACAGAGGGGGCACTACACCGAGAAAAAGGCAGCCGAACTTGCAAGGGTAATAGTTTGTGTTGTCGAGGCATGCCACTCTTTGGGGGTCATGCATCGGGACTTGAAGCCAGAGAACTTTCTATTCGTCGACCAAGAGGAAGAATCACCACTTAAGACAACAGATTTTGGGCTCTCTGTGTTCTTTAGACCAGAAATGGAGCAAGGCATATTTGAGCAAGTTTTAAAAGGAGAACTTGACTTTGCCTCTGAACCATGGCCTAGTATATCTGCCAGTGCAAAAGATCTTGTTCGAAGAATGCTTGTAAGAGACCCTAAGAAGCGACTAACAGCACATGTCGATGGTGTTGCTCTTGATAAACCTCTTGATTCTGCTGTCATAAGTCGTTTGAAGCAATTCTCTGCCATGAACAAGCTCAAAAAAATGGCCTTCCCAGTTGTCATCTGTATTACACAGTATGACTTGCTGAGTTATCCTTTGGCAGATGTTGATAATAGTGGCACCATAGACTATGGTGAATTCATAGCAGCTATGTTTCATGTAAACAAGGTCCAGAGGGAGGATCATCTATGTACAGCGTTCTCCTACTTTGACAAAGATGGTAGTGGGTACATTACACAAGATGAGCTCCAGCAAGCCTGTCAGCAGTTTGGTCTGGACGATGTTCACCTAGATGACGTTATTCGTGAAGTTGACCAGGATAATGATGGACGCATTGATTACAGTGAGTTTGTTGCAATGATGCAAGACACTGGTTTTGGCAAAAAGGGACTAGAGAATAGCATGAGTAAAATAGCGGATGCCTTCAAGCATTAA 1506 0.4449 MGNNCVGPNLGRNGFFHSITAATWKTRPPEDRLPPPNAENKNESAANAGSDSFKYSNAGKDSNAPKSVESTPPEPVKIISVETKPPQPEKFVKPEVNEPASNTADAGKAKKPAHIRRVSSVGLQVESVLGGKTVNLKDVHSLGWKLGQGQFGMTFLCVEKATGKEFACKSIAKRKLVTQEDVDDVRREIQIMHHMVGHPNVVQIVGAYEDVVAVHLIMELCAGGELFDRIIQRGHYTEKKAAELARVIVCVVEACHSLGVMHRDLKPENFLFVDQEEESPLKTTDFGLSVFFRPEMEQGIFEQVLKGELDFASEPWPSISASAKDLVRRMLVRDPKKRLTAHVDGVALDKPLDSAVISRLKQFSAMNKLKKMAFPVVICITQYDLLSYPLADVDNSGTIDYGEFIAAMFHVNKVQREDHLCTAFSYFDKDGSGYITQDELQQACQQFGLDDVHLDDVIREVDQDNDGRIDYSEFVAMMQDTGFGKKGLENSMSKIADAFKH 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1222 501 Gene3D - 340 480 - -
Glsi11g1222 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Glsi11g1222 501 MobiDBLite consensus disorder prediction 40 69 - -
Glsi11g1222 501 ProSitePatterns Protein kinases ATP-binding region signature. 146 173 IPR017441 GO:0005524
Glsi11g1222 501 Pfam EF-hand domain pair 418 479 IPR002048 GO:0005509
Glsi11g1222 501 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Glsi11g1222 501 FunFam Calcium-dependent protein kinase 1 142 225 - -
Glsi11g1222 501 SMART serkin_6 140 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1222 501 Pfam Protein kinase domain 145 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1222 501 CDD EFh 423 479 IPR002048 GO:0005509
Glsi11g1222 501 SUPERFAMILY EF-hand 390 479 IPR011992 -
Glsi11g1222 501 ProSiteProfiles Protein kinase domain profile. 140 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1222 501 SUPERFAMILY Protein kinase-like (PK-like) 142 341 IPR011009 -
Glsi11g1222 501 PANTHER SERINE/THREONINE-PROTEIN KINASE 136 294 - -
Glsi11g1222 501 FunFam Calmodulin 1 380 481 - -
Glsi11g1222 501 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Glsi11g1222 501 SMART efh_1 390 411 IPR002048 GO:0005509
Glsi11g1222 501 SMART efh_1 453 481 IPR002048 GO:0005509
Glsi11g1222 501 SMART efh_1 419 447 IPR002048 GO:0005509
Glsi11g1222 501 Gene3D Transferase(Phosphotransferase) domain 1 179 339 - -
Glsi11g1222 501 ProSiteProfiles EF-hand calcium-binding domain profile. 390 414 IPR002048 GO:0005509
Glsi11g1222 501 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Glsi11g1222 501 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Glsi11g1222 501 ProSiteProfiles EF-hand calcium-binding domain profile. 453 484 IPR002048 GO:0005509
Glsi11g1222 501 MobiDBLite consensus disorder prediction 21 112 - -
Glsi11g1222 501 Gene3D Phosphorylase Kinase; domain 1 145 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1222 Glsi-ChrGlsi11 7639615 7646859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1222 1 491 EF-hand Containing Proteins AT2G38910 56.757 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi11g1222 Pkinase 9.7e-40 CL0016