Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1213 ATGGGAAATAACTGCGTTGGATCGAGAACTTCGAAGAATGAACATACTTCCTCTGTTCCCAGTTCATTTTGGTTGTCACGAATAACAAAGGGTGTGGTTTTCAATACCCGCAAAGCAATTCCCGGTGCAGCACCATCTGCAAGTAAAAATTCAAATGCTAGAGAGACTGTTCAAAACAGGCCTCCAGAGGTAGTGAAACTTGATAAGGAGCAGATTAAACCAGTGCAACCCACAACCTCTGAACAGGGGATGAAGCCACCTCAACCCAAAGAGACTAAATCCTCAGAACCAATAAGAACAGCACCAACAACGATAAAAAAGGAAGAGATAAGACCAGCAGAGCCAACCAAACCAAAGAAGCCTCACAACGTGAAGAGGCTAGCAGCTGCTGGGCTTCAAGCAGAGTCGGTGTTGCAAACAAAAACTGGTCATGTTAAAGAGTACTACAATTTGGGACGAAAGCTTGGAAATGGGCAGTTCGGAACCACTTTCCATTGTTTGGAGAAAGACACTGGCAAAGAGTACGCTTGCAAGTCCATTGCAAAAAGAAAATTGCTGACAGATGATGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGCAGGGAGTCCTAATGTGATCTCAATCAAAGGGTCTTATGAGGATGCAGTTGCAGTTCATGTTGTCATGGAGTTGTGTGTAGGAGGGGAACTCTTTGATAGGATTGTGGAAAGAGGGCATTACACAGAAAGAAAAGCAGCCCAAATAGCGAGAACTATTGTTAGTGTCATAGAAGCTTGCCACTCCCTTGGAGTAATGCACCGTGACCTTAAGCCCGAGAATTTTCTGTTCGTTAATGAACAGGAAGACTCACCCCTTAAGGCGATAGATTTTGGCTTGTCTGCATTCTTCAAACCAGGAGACATTTTCAACGACGTGGTAGGAAGCCCTTATTACGTTGCACCAGAAGTTCTACGCAAGCGTTATGGTCCAGAAGCTGATGTCTGGAGCGCTGGCGTCATCATATTCATTCTCTTAAGTGGGGTGCCTCCATTTTGGGCTGAAACGGAGCAAGAGATATTTAAGGCGGTTTTGCATGGTGAACTCAATTTCTCGTCAGATCCCTGGCCTAATATCTCTGAAAGTGCAAAGGACTTGGTCAGGAAGATGCTTGTTAGAGATCCTAGCAAAAGGATAACAGCCCATGAAGTTCTTTGTCACCCTTGGATTCAGGTTGATGGAGAAGCTCCGGACAAGCCTCTTGACTCTGCAGTTCTGACTCGCCTGAAGCAGTTTTCTGCAATGAACAAGCTCAAAAAAATGGCTCTTAGAGTTATTGCACAGAACCTGTCTGAAGAAGAAATTGCCGGGTTGAAAGAAATGTTTAAGATGATAGATACAGACAACAGTGGTCAAATTACTTTTGAAGAACTCAAGGATGGACTGAAAAGATTTGGTGCTAATCTCAGTGAGTCTGAAATTCACGATCTTATGCAAGCTGCGGATGTTGATAACAGTGGCACAATTGAGTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTGGAGAGGGAAGATCATTTAGTTGCTGCTTTCTCATATTTTGATAAAGACGGAAGTGGCTACATCACTCAAGATGAGCTTCAACAAGCTTGCGAAGAATTTGGCATTGAAGATGTCCGCTTGGAAGAAATGATCCTAGAAGCTGATCAAGATAATGATGGCCGAATAGACTACAACGAATTCGTGGCTATGATGCAGAGAGGCAATGCAGATTTGGGTAAGAAGGGTGTAAAAAAGGGAGACAATAGTTTTAGCATTGGATTTAGGGAGGCATTATCCCGGTTGGGGTTGGGTCCACTTGTTAATGGGGTCTTTACTTTGGACGAATCCGATACAATAGCGTCGTATGGCCTTGGAAAGGAATCCGAGGAAGGAGATCCATTTATGATGAATGCTGAGGCATGTAATTGCAAACCATGTTTGCGCGTGGAACACACGTTCATTGAAAGCTCGTCCCACTTTGAGCTTCCCTTCCACAAATCTCTCTCGCGCATATCTCCAACGAAAACCTCAGTGTCACCAACTCCGGCTTTCCATCTTCAAGTTTCAGCTATCGTCAATTAG 2124 0.4397 MGNNCVGSRTSKNEHTSSVPSSFWLSRITKGVVFNTRKAIPGAAPSASKNSNARETVQNRPPEVVKLDKEQIKPVQPTTSEQGMKPPQPKETKSSEPIRTAPTTIKKEEIRPAEPTKPKKPHNVKRLAAAGLQAESVLQTKTGHVKEYYNLGRKLGNGQFGTTFHCLEKDTGKEYACKSIAKRKLLTDDDVEDVRREIQIMHHLAGSPNVISIKGSYEDAVAVHVVMELCVGGELFDRIVERGHYTERKAAQIARTIVSVIEACHSLGVMHRDLKPENFLFVNEQEDSPLKAIDFGLSAFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVIIFILLSGVPPFWAETEQEIFKAVLHGELNFSSDPWPNISESAKDLVRKMLVRDPSKRITAHEVLCHPWIQVDGEAPDKPLDSAVLTRLKQFSAMNKLKKMALRVIAQNLSEEEIAGLKEMFKMIDTDNSGQITFEELKDGLKRFGANLSESEIHDLMQAADVDNSGTIEYGEFIAATLHLNKVEREDHLVAAFSYFDKDGSGYITQDELQQACEEFGIEDVRLEEMILEADQDNDGRIDYNEFVAMMQRGNADLGKKGVKKGDNSFSIGFREALSRLGLGPLVNGVFTLDESDTIASYGLGKESEEGDPFMMNAEACNCKPCLRVEHTFIESSSHFELPFHKSLSRISPTKTSVSPTPAFHLQVSAIVN 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1213 707 ProSitePatterns EF-hand calcium-binding domain. 569 581 IPR018247 -
Glsi11g1213 707 Gene3D - 432 591 - -
Glsi11g1213 707 ProSitePatterns EF-hand calcium-binding domain. 535 547 IPR018247 -
Glsi11g1213 707 MobiDBLite consensus disorder prediction 73 101 - -
Glsi11g1213 707 CDD EFh 455 514 IPR002048 GO:0005509
Glsi11g1213 707 CDD STKc_CAMK 149 406 - -
Glsi11g1213 707 ProSitePatterns Protein kinases ATP-binding region signature. 155 182 IPR017441 GO:0005524
Glsi11g1213 707 ProSiteProfiles Protein kinase domain profile. 149 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1213 707 SMART efh_1 526 554 IPR002048 GO:0005509
Glsi11g1213 707 SMART efh_1 454 482 IPR002048 GO:0005509
Glsi11g1213 707 SMART efh_1 490 518 IPR002048 GO:0005509
Glsi11g1213 707 SMART efh_1 560 588 IPR002048 GO:0005509
Glsi11g1213 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Glsi11g1213 707 FunFam Calcium-dependent protein kinase 1 151 234 - -
Glsi11g1213 707 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Glsi11g1213 707 SMART serkin_6 149 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1213 707 MobiDBLite consensus disorder prediction 1 21 - -
Glsi11g1213 707 CDD EFh 526 586 IPR002048 GO:0005509
Glsi11g1213 707 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Glsi11g1213 707 FunFam Calcium-dependent protein kinase SK5 235 419 - -
Glsi11g1213 707 Gene3D Transferase(Phosphotransferase) domain 1 235 431 - -
Glsi11g1213 707 ProSiteProfiles EF-hand calcium-binding domain profile. 486 521 IPR002048 GO:0005509
Glsi11g1213 707 MobiDBLite consensus disorder prediction 41 123 - -
Glsi11g1213 707 PANTHER SERINE/THREONINE-PROTEIN KINASE 139 581 - -
Glsi11g1213 707 MobiDBLite consensus disorder prediction 102 121 - -
Glsi11g1213 707 Pfam Protein kinase domain 149 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1213 707 SUPERFAMILY Protein kinase-like (PK-like) 147 408 IPR011009 -
Glsi11g1213 707 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Glsi11g1213 707 SUPERFAMILY EF-hand 436 587 IPR011992 -
Glsi11g1213 707 ProSiteProfiles EF-hand calcium-binding domain profile. 522 557 IPR002048 GO:0005509
Glsi11g1213 707 FunFam Calcium-dependent protein kinase 1 415 589 - -
Glsi11g1213 707 Gene3D Phosphorylase Kinase; domain 1 151 234 - -
Glsi11g1213 707 Pfam EF-hand domain pair 526 586 IPR002048 GO:0005509
Glsi11g1213 707 Pfam EF-hand domain pair 455 515 IPR002048 GO:0005509
Glsi11g1213 707 ProSiteProfiles EF-hand calcium-binding domain profile. 560 591 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1213 Glsi-ChrGlsi11 7594062 7601783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1213 1 609 EF-hand Containing Proteins AT3G10660 66.308 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi11g1213 Pkinase 3.6e-73 CL0016