Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1204 ATGAGCAACGCAACTGATTCCTCAGGATTCTTTGGATCCAACAACATCAGTGGGTTTGGTTATGGCATAGGAATTTCAAGTGGTATTCTCCTGCTCATCACAACCATCACCCTCACTTCCTACTTCTGCACCAGAACGTCACAGGCATCGGCTGCTACTCCCTCTATTCGGAGAGATAGTAATGCCCCCACTTTCCTGGAACCTCAGCATTCGGTAGTGGAAGTAGGGTTAGATGAAGCCACAATTCTGAGTTACCCAAAGCTGCTGTATAGTGAGGCGAAGGCGCAGAAGTCAGATTGGGCGGCTGCTACGTGCTGCTCCATATGCCTGGCAGATTACAAGGGTAGGGATATGGTTCGGGTGCTACCGGATTGTGGGCATCTGTTCCACATCAGGTGCATTGACCCATGGTTGAGAATGCATCCAACATGTCCACTCTGCAGAACATCTCCGGTCCCAACACCACTCTCAACACCTCTCGCCGAAGTGGTTCCATTGGCCACCTTACGAGTTTCCTAA 519 0.5048 MSNATDSSGFFGSNNISGFGYGIGISSGILLLITTITLTSYFCTRTSQASAATPSIRRDSNAPTFLEPQHSVVEVGLDEATILSYPKLLYSEAKAQKSDWAAATCCSICLADYKGRDMVRVLPDCGHLFHIRCIDPWLRMHPTCPLCRTSPVPTPLSTPLAEVVPLATLRVS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1204 172 SMART ring_2 106 147 IPR001841 -
Glsi11g1204 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 153 IPR013083 -
Glsi11g1204 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 162 IPR045899 -
Glsi11g1204 172 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Glsi11g1204 172 CDD RING-H2_PA-TM-RING 105 148 - -
Glsi11g1204 172 Pfam Ring finger domain 106 148 IPR001841 -
Glsi11g1204 172 SUPERFAMILY RING/U-box 87 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1204 Glsi-ChrGlsi11 7540536 7541054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1204 2 168 C3H Transcription Factor Family AT2G35910 56.886 3.48e-57 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2514 02 74986335 74986841 Glsi11g1204 11 7540536 7541054 CCT