Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1203 ATGGCCATGCAAACTGTTTATTTCAAAGAAAATAAAGGAATTGTCCACAATTCCGTTGGGCAATTGTCATCTGTAACTTCAGCCCCCTGGTGGAGTGCCTTTGGATCTCAATCAGTTCATGGGGAATCAAGTAGCAAAATGAGACCTTTTTCATTGGAACTTCCCAACTATGTTGACCAACTTGCTGCCCCAAAGCAACCAGGAAGAGGAGCTCAACAAGTGTTGGATAAAGGACATACAACTGAGTTCACTATCTTTCCAGATGATTGTGAATTATCAGATGATGCACAAAAGCATCAGTCAGCCATATCACTTCAATCATCACTTCCTGATCCTCGTGGTTATTTTGAGCTAAAATTTAGTCAGCAACCTATGATCTGTTCAAAGTATCCTTATATGGATCAATTTTATGGGCTCATCTCAACTTATGGACCACAAATTTCGGGGCGTATAATGCTGCCACTTAACTTGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATCAGACGTCGGCAGTCCCGTGCAAAGGCTGTACTCGAGAATAAATTGAAAAAACGTTGCAAGTCCTATATGCATGAATCACGCCATCTCCATGCAATGAGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACGAGAAAATTGAATAATGGAAATGGAAGCACAGTGAATAAAACTGGTGATGGAATAGTGCTGTCCACTGGCTCTCAGAGTTCTGAAGTTCTGCAATCCGAGGGTGGAGTTTTAAATTCATCAAAGGAAACCAATGGCAGCAGTCCAAATGTTTCAGGGTCAGAGGTGACTAGCATGTATTCGCAGGGAAGTCTTGATAGTTTTGCTGTCACTCATCTTGGATCCACTGTCCACTCTCTGGCAGACAGGATAAACAGTGGGCACGGTATTGTCATGCCCATGAAATGGGTTGCAGCAGCAGGTAACTGCTGCAAACTTTAA 978 0.4305 MAMQTVYFKENKGIVHNSVGQLSSVTSAPWWSAFGSQSVHGESSSKMRPFSLELPNYVDQLAAPKQPGRGAQQVLDKGHTTEFTIFPDDCELSDDAQKHQSAISLQSSLPDPRGYFELKFSQQPMICSKYPYMDQFYGLISTYGPQISGRIMLPLNLTSDDGPIYVNAKQYHGIIRRRQSRAKAVLENKLKKRCKSYMHESRHLHAMRRPRGCGGRFLNTRKLNNGNGSTVNKTGDGIVLSTGSQSSEVLQSEGGVLNSSKETNGSSPNVSGSEVTSMYSQGSLDSFAVTHLGSTVHSLADRINSGHGIVMPMKWVAAAGNCCKL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1203 325 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Glsi11g1203 325 Gene3D - 160 222 - -
Glsi11g1203 325 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Glsi11g1203 325 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Glsi11g1203 325 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Glsi11g1203 325 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Glsi11g1203 325 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 47 279 IPR001289 GO:0003700|GO:0006355
Glsi11g1203 325 MobiDBLite consensus disorder prediction 250 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1203 Glsi-ChrGlsi11 7523825 7528672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1203 1 325 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.064 3.22e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Glsi11g1203 CBFB_NFYA 5.6e-25 No_clan