Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1199 ATGAATGACTTGTTCTCGGGCTCCTTCTCTCGCCTCCGTAGCGACCAGGCGTCGCCCCACCATCATGTCATCGAGATGAGTGCCGCGGCGTCGACGGCTTCCACCGGCGGCGTCAACCTCGACAAGTTCTTCGAGGACGTGGAGTCAATCAAGGACGAGCTCAAGGAGCTTGATCGCCTTAACCACAACCTCCAGAGTTCTCACGAGCAGAGTAAGACTCTTCATAATGCTAAGGCCGTCAAGGACCTCCGCTCTCGCATGGACGGCGATGTCTCTCTTGCTCTGAAGAAAGCCAAGCTCATCAAGGTCAAGTTGGAAGCCCTGGAGCGATCCAACGCTGCCAACCGAAGCTTGCCCGGGTGCGGGCCAGGATCGTCCTCCGACCGGACTCGCACCTCTGTGGTCAACGGGTTGAAGAAGAAGCTGAAGGACTCCATGGAGAGCTTCAATAACCTGAGGCAGCAGATCTCATCCGAATACCGAGATACCGTACAACGCAGGTATTTCACGGTCACCGGCGAGAACCCCGATGAGAAGACCATTGACCTCTTGATCTCAACAGGTGAGAGTGAGACTTTCCTTCAGAAAGCCATTCAAGAACAAGGTAGAGGAAGAATTCTGGATACTATCAATGAAATTCAAGAGAGGCATGATGCTGTGAAAGAGATAGAGAGGAATCTCCAGGAGTTGCATCAAGTGTTCCTTGACATGGCAGTGTTGGTGGAATCTCAAGGTGAACAATTGGATGACATTGAGGGCCATGTGGCGAGAGCTAGCTCATTTGTGAGGACAGGAGCTCAGGAATTGCAGACTGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTTTGCTATTATAATTCTCCTAGTGATCATCTTGTTTGTGGTGCTCTTCACTGTTAAACCATGGAAAGGTAATGGTGGTAGTCCGCCGACTTCGCCTCAAACACCTGCGTCGCCTCCTCCTCCTCCTCCTCCTACCCCTCCTGCAGCTTAA 1002 0.521 MNDLFSGSFSRLRSDQASPHHHVIEMSAAASTASTGGVNLDKFFEDVESIKDELKELDRLNHNLQSSHEQSKTLHNAKAVKDLRSRMDGDVSLALKKAKLIKVKLEALERSNAANRSLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNNLRQQISSEYRDTVQRRYFTVTGENPDEKTIDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIERNLQELHQVFLDMAVLVESQGEQLDDIEGHVARASSFVRTGAQELQTARKHQKNTRKWTCFAIIILLVIILFVVLFTVKPWKGNGGSPPTSPQTPASPPPPPPPTPPAA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1199 333 Gene3D - 38 170 - -
Glsi11g1199 333 MobiDBLite consensus disorder prediction 307 333 - -
Glsi11g1199 333 Gene3D - 207 303 - -
Glsi11g1199 333 Coils Coil 135 159 - -
Glsi11g1199 333 Coils Coil 40 70 - -
Glsi11g1199 333 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Glsi11g1199 333 PANTHER SYNTAXIN 57 292 IPR045242 -
Glsi11g1199 333 CDD SynN 40 197 IPR006011 GO:0016020
Glsi11g1199 333 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Glsi11g1199 333 MobiDBLite consensus disorder prediction 315 333 - -
Glsi11g1199 333 CDD SNARE_syntaxin1-like 209 271 - -
Glsi11g1199 333 SMART SynN_4 35 161 IPR006011 GO:0016020
Glsi11g1199 333 SMART tSNARE_6 205 272 IPR000727 -
Glsi11g1199 333 FunFam Syntaxin 132 203 303 - -
Glsi11g1199 333 Pfam SNARE domain 246 298 IPR000727 -
Glsi11g1199 333 SUPERFAMILY t-snare proteins 38 265 IPR010989 GO:0016020|GO:0016192
Glsi11g1199 333 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Glsi11g1199 333 Coils Coil 210 233 - -
Glsi11g1199 333 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 37 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1199 Glsi-ChrGlsi11 7509615 7511080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1199 29 333 SNARE and Associated Proteins AT3G11820 75.405 2.05e-160 449