Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1194 ATGAAATTCCAGATTTGGGATGAAGATGGACATTTTCTATCGGTAAAGTGGGACATTCTTGAGCCCTTCCATTCCATTAGGTTGGAAAAGTCATTTCCTCTAACCCTTTGCGTCTGGAGGCTTTTATTTTTCCGTGTTTCGACTTTCACACAGTTGAAACACGGTGTGCGTATAAATAACAAGACCTTCCCCTCTCGTCCTCTCAATTGCCTAACATCGAATTCCAACCATTACAACTTACAACTCCTCCTTAATCATCCGATCCAGATAAACCTCCTTTCAGGGCTTCAGCTTTCATTTGAGAAAGATATGGATCATGAGATTGATGTTCCTCCCTTCTTTCTCTGCCCCATTTCGTTAGATATCATGAAGGATCCAGTGACTCTGCCCACTGGCATTACTTACGACCGAGAGAGCATTGAGAAATGGTTGTTTTCTGGGAAAAATAAGACTTGCCCAGTCACCAAGGAACCACTCCCAAACGATGCTGATCTCACCCCCAACCACACCCTTCGCCGATTGATTCAGGCCTGGTGTACAATGAACGCTTCTCACGGCATTCAAAGGATTCCCACACCTAAGCCTCCCCTCGACAAAACCCAGATTGCCAAACTCCTCAAAGATGCTTCCCGATCACCTCTTCCATGTCTCCGAAGACTCAAATCCCTCGCTTCTGAGAGCGAAACAAATAGACGCTGCATGGAAGCTGCGGGTACTGTCGAGTTCTTAGCATCAGTTGTAGTGAGCAACCTCGATGATGATGAGTCTGACTCCAAAACCAGTTCAGCTGCTGAGGCATTGAATGTCCTCCACAGCCTCCACGTATCTGAAGCTAGCTTAAAGACTCTCATAGGCTTCAAAAATGGACAATTTATTGACTCCTTGACAAGAGTCATGCAGAGGGGTATCTATGAGTCACGAGCTTATGCAGTTTTATTGTTGAAATCTATGTTCGAATTGGCTGATCCTACGCTCTTGTTCAACGTAAGAGATGAATTGTTCCTTGAATTAGTGCAAGTCCTCAAAGACCAGATTTCCCAGCAGGCCTCAAATGCTACACTCCAAACGCTGATCCAACTGTGCCCTTGGCGGAGAAACAGAAACAAAGCAGTAAAAGCCGGGGCTGTTTCGGTTCTCATAGAACTTCTTCTCGACTGTAAGGACAGAAAGCCATGTGAAATGATGCTAGTGGTGTTGGAGATGCTGTGTGGGTGTGCTGAGGGACGAGCAGAGCTGTTGAGTCACGGAGCAGGGCTAGCCATCGTGACCAAAAAGATTCTAAGGGTTTCAACGATGGCAAACGATAGGGCTGTCAGAATTCTACTGCACATTTCCAAGTTCTCTGCAACTCCAAGTGTTGTACAGGAAATGGTGCAACTGGGTGTAGTGGGAAAGCTCTGTTTTGTGCTTCAAATGGACAATGGAAGCAAGACCAAGGAGAAAGCCAGCGAGATACTCAAGCTACATGCTCGAGCATGGAGGAATTCTCCATGCATACCGAGCACTTTACTTTCTTACACATCTTAA 1527 0.4584 MKFQIWDEDGHFLSVKWDILEPFHSIRLEKSFPLTLCVWRLLFFRVSTFTQLKHGVRINNKTFPSRPLNCLTSNSNHYNLQLLLNHPIQINLLSGLQLSFEKDMDHEIDVPPFFLCPISLDIMKDPVTLPTGITYDRESIEKWLFSGKNKTCPVTKEPLPNDADLTPNHTLRRLIQAWCTMNASHGIQRIPTPKPPLDKTQIAKLLKDASRSPLPCLRRLKSLASESETNRRCMEAAGTVEFLASVVVSNLDDDESDSKTSSAAEALNVLHSLHVSEASLKTLIGFKNGQFIDSLTRVMQRGIYESRAYAVLLLKSMFELADPTLLFNVRDELFLELVQVLKDQISQQASNATLQTLIQLCPWRRNRNKAVKAGAVSVLIELLLDCKDRKPCEMMLVVLEMLCGCAEGRAELLSHGAGLAIVTKKILRVSTMANDRAVRILLHISKFSATPSVVQEMVQLGVVGKLCFVLQMDNGSKTKEKASEILKLHARAWRNSPCIPSTLLSYTS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1194 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 189 IPR013083 -
Glsi11g1194 508 CDD RING-Ubox_PUB 111 162 IPR045210 -
Glsi11g1194 508 PANTHER WDSAM1 PROTEIN 106 500 IPR045185 GO:0061630
Glsi11g1194 508 Gene3D - 200 496 IPR011989 -
Glsi11g1194 508 Pfam U-box domain 110 182 IPR003613 GO:0004842|GO:0016567
Glsi11g1194 508 SUPERFAMILY RING/U-box 104 185 - -
Glsi11g1194 508 ProSiteProfiles U-box domain profile. 109 185 IPR003613 GO:0004842|GO:0016567
Glsi11g1194 508 FunFam RING-type E3 ubiquitin transferase 104 188 - -
Glsi11g1194 508 SUPERFAMILY ARM repeat 295 488 IPR016024 -
Glsi11g1194 508 SMART Ubox_2 113 178 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1194 Glsi-ChrGlsi11 7481013 7482708 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1194 104 504 U-box Gene Family AT2G35930 57.108 3.99e-169 482