Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1193 ATGGATAAAATTGAAGTTCCCGAGTATTTCATCTGCCCCATATCCCTCCAAATCATGAAAGATCCTGTAACTGTTATAACAGGCATCACATATGACCGAGATAGCATCGAACACTGGCTATTCACCAACCAAAACTTCACCTGCCCTGTCACCAAACAGCCTCTGCCAATAGACTCTGATTTGACCCCTAATCACACCCTCCGCCGCCTAATCCAAGCTTGGTGTACCCAGAACGCCTCCCTTGGCATTGATCGGATTCCCACCCCTCGGCCACCACTTCACAAGCTTCAAGTCCTCAAGCTCCTCAAAGACCTCGCCAACCCCCACTTGCAGCTTAAATCGCTCAGACAATTGGAATTGCTTGCAGCCCAGAATGAAAGGAATAGAAAGTGTTTGCTGGAGGCTGGTGTGCCAAAGGCCATGATCAAGTTCATAGTGGCTTGTTTTAATAAAGGCCAAATTGATGAGGGCCTTGAAGAAGCTCTGAGTTTACTGCAGTTTGTCAAAATTCCCGCAGAGGAAATAAAGCAGCTGCTTGCGGAAGATGATCAAATACTGGAATCTCTGACGTGGGTTTTAGGGTGTGAAATGGAAAATTCTATTGCTGTGAAATCCCATGCCGTTTATGTGCTCAAAAGAATCGTCAAGAAGGCTAAGTATAGTGTTTTGGAGAGACTCAAACCTGAATTCTTCGAAAGGATAGTGAAAATCTTACGAAATGGGATTACCCAACAAGGGACGAACGGTGCTTTGCAGGTCTTGTTAGGCGCTTGTCCTTGGGGAAGAAATCGAATCATGATGGTGGAAGCTGGCGTTGTTCGTGAAGTCATCGAGATAGAGTTGGGGGCACCAGAAAAGAGAACAACGGAGTTGACAATGGGGATATTATTTCATCTGTGCTGTTGTGCAGAAGGAACGGCTCAGTTTGTTAGTCACAGAGGAGGCATTGCAGTGTTGACGGAGCGAATGTTGAAGGTATCTCAGGGAGTAGATGACAGAGCCATATTTATTCTGTCCTTGATATCCAAGTTGTCTGAGACACAAACGGTGATTCAAGAGATGTTGAAGGTTGGAACTGTGTCAAAGCTTTGCATGTTGCTTCAGGCTGATCATCCCACATATCTCAAAGACAAAGCAAGGGAAATTTTGAAGTCTCATTCTGAGGTTTGGAAGAATTCGCCTTGCTTTCCTGGTCGTTCTTTTTATGCAAGCTTGCATATATAG 1224 0.451 MDKIEVPEYFICPISLQIMKDPVTVITGITYDRDSIEHWLFTNQNFTCPVTKQPLPIDSDLTPNHTLRRLIQAWCTQNASLGIDRIPTPRPPLHKLQVLKLLKDLANPHLQLKSLRQLELLAAQNERNRKCLLEAGVPKAMIKFIVACFNKGQIDEGLEEALSLLQFVKIPAEEIKQLLAEDDQILESLTWVLGCEMENSIAVKSHAVYVLKRIVKKAKYSVLERLKPEFFERIVKILRNGITQQGTNGALQVLLGACPWGRNRIMMVEAGVVREVIEIELGAPEKRTTELTMGILFHLCCCAEGTAQFVSHRGGIAVLTERMLKVSQGVDDRAIFILSLISKLSETQTVIQEMLKVGTVSKLCMLLQADHPTYLKDKAREILKSHSEVWKNSPCFPGRSFYASLHI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1193 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Glsi11g1193 407 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Glsi11g1193 407 Coils Coil 115 135 - -
Glsi11g1193 407 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Glsi11g1193 407 SUPERFAMILY RING/U-box 3 83 - -
Glsi11g1193 407 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Glsi11g1193 407 Gene3D - 93 391 IPR011989 -
Glsi11g1193 407 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Glsi11g1193 407 PANTHER WDSAM1 PROTEIN 3 397 IPR045185 GO:0061630
Glsi11g1193 407 CDD RING-Ubox_PUB 7 58 IPR045210 -
Glsi11g1193 407 SUPERFAMILY ARM repeat 98 373 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1193 Glsi-ChrGlsi11 7473405 7474628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1193 2 396 U-box Gene Family AT3G11840 42.825 4.22e-118 350