Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1190 ATGGCGACGTACTTTCATGGTAATTCGGAGATCCAAGCACCCGATGGCCTCCAGACTCTTGTACTCATGAACCCGGGTTACCTCCAGTACTCCGACACGCCGCCTCCGCCGCCTCCGCACCCTAGCAACCTTGTCTTCCTTAACTCCATCGCTGCCAACAACTCGCTCACTCACGCAGCCTCTACCCTCCCTCACGCGCCACCCACTCACACCCAACAATTCGTGGGCATCCCACTCCCCACCACCGCCTCCCAAGACCCCAACCACCAGTCCATGCATGCCCATCACGACGTCTCTGCCTTGCATGGATTTGTGCCCCGCATGCAGTACAATCTCTGGAATACAATTGACCCCAACTCGGCGGCGCGTGAAGCTCCACGCGCTCAGCAGGGATTGTCACTGAGCCTTTCGTCGCAGCAAGCCGGAATTGGGTCTTTCCGTGATGTAGCGTCACAGTCTCAAGCGCCTGCTATGTCTGGAGATGATGTGCGTGTGTCTGGTGGATCATCATCTTCGGCTTCTGGGGTTACGAATGGCGTTTCAGGCATTCAGAGTGTGCTTCTGAGCTCCAGGTACTTGAAGGCAGCACAGGAACTTCTGGACGAGGCCGTCAATGTCAACAATGGGCTCAAGACTGAATTGGCAAAGAAGAGCGGTGGCCAGACTAAGATGATTGGAGGGTCGTCCGGCGGAGCGGCAAGTGGAGACGGTTCAGTTGGTGGTAGTGGGGAAGGAAGCGGTAAGCGTAGCTCTGAGCTATCAGCCGCCGAGAGACAAGAAATCCAGATGAAGAAGGCAAAGCTAATCAGCATGCTCGATGAGGTTGAGCAAAGGTACAGACAGTACCGGCACCAGATGCAGATTGTGATATCCTCGTTTGAGCAAGCTGCGGGAATTGGGTCGGCGAAAACATACACTGCCCTTGCACTGCAAACGATCTCCAAGCAGTTTCGGTGCTTGAAAGATGCCATAACAGCCCAAATCCGAGCTGCGAATAAGACCTTAGGAGAAGAAGATTGCTTTGCAGCTAAAATTGAAGGTTCAAGGCTCAAATATGTAGACCATCATCTGCGCCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCATCCTTATCCCAAGGATTCAGACAAACTCATGCTTGCAAAACAAACAGGGCTCACCAGGAGTCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAACCAATGGTGGAAGAAATGTACTTGGAGGAAAAAAAGCAAGACCAGAATGGGTCTGAAGAGAAATCAAGCAAGAGCAGTGAAGATCCTACAATTAACGCTGCAGCCCCACCGAAGAATGGTTCTGCCTCAGAAACTGAAGCTAAAAGCTTCAATTCCAAACAAGAAGCGTCTCCAAACCAGAACACTCCAACAGTTTCAGTTTCTAAACCATCAATGTCAGCAGCTAGGGGTAATGTCGGCAACCAGTTCGGATTCAGCTTCATTGGGTCATCAGAGCTGGAAGGGATCACACAAGGAAGTCCTAAGAAACCAAGGAACTATGAAATTCTACAATCCCCAACTTCAATGAACATGGATGTGAAGCCTAATGAGCAGCTCTCAATGAATTTTGGAGACGAGAGGCAGGGCAGAGATGGGTACTCTTTCATGGGAACTCAAACAAACTTTATTGGAGGTTTCGGACAATACCCAATAGAGGAAATTGGCAGGTTTGACGCAGAGCAGTTTACACCAAGGTTTTCAGGTAATGGAGTTTCCCTCACTCTTGGTCTTCCTCACTGTGACTCACTGTCAGGAACCCATCAAACATTTCTCCCAAACCAGAACATTCAGCTGGCAAGAAGACTGGAAATTGGGGAACCAAACGAATTTGGTGCCATAAACCCTTCCACTCCTCACACTTCAGCTGCATTTGAGAACATCAACATGCAGAACCCAAAGAGATTCGCTGCACAATTGCTGCCAGACTTTGTCACCTAA 2058 0.4995 MATYFHGNSEIQAPDGLQTLVLMNPGYLQYSDTPPPPPPHPSNLVFLNSIAANNSLTHAASTLPHAPPTHTQQFVGIPLPTTASQDPNHQSMHAHHDVSALHGFVPRMQYNLWNTIDPNSAAREAPRAQQGLSLSLSSQQAGIGSFRDVASQSQAPAMSGDDVRVSGGSSSSASGVTNGVSGIQSVLLSSRYLKAAQELLDEAVNVNNGLKTELAKKSGGQTKMIGGSSGGAASGDGSVGGSGEGSGKRSSELSAAERQEIQMKKAKLISMLDEVEQRYRQYRHQMQIVISSFEQAAGIGSAKTYTALALQTISKQFRCLKDAITAQIRAANKTLGEEDCFAAKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKLMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEKKQDQNGSEEKSSKSSEDPTINAAAPPKNGSASETEAKSFNSKQEASPNQNTPTVSVSKPSMSAARGNVGNQFGFSFIGSSELEGITQGSPKKPRNYEILQSPTSMNMDVKPNEQLSMNFGDERQGRDGYSFMGTQTNFIGGFGQYPIEEIGRFDAEQFTPRFSGNGVSLTLGLPHCDSLSGTHQTFLPNQNIQLARRLEIGEPNEFGAINPSTPHTSAAFENINMQNPKRFAAQLLPDFVT 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1190 685 CDD homeodomain 374 435 IPR001356 GO:0003677
Glsi11g1190 685 SMART prehox3 181 326 IPR006563 -
Glsi11g1190 685 MobiDBLite consensus disorder prediction 443 459 - -
Glsi11g1190 685 MobiDBLite consensus disorder prediction 443 506 - -
Glsi11g1190 685 Gene3D - 377 457 - -
Glsi11g1190 685 ProSiteProfiles 'Homeobox' domain profile. 371 434 IPR001356 GO:0003677
Glsi11g1190 685 Pfam Associated with HOX 186 325 IPR006563 -
Glsi11g1190 685 Coils Coil 258 285 - -
Glsi11g1190 685 MobiDBLite consensus disorder prediction 145 176 - -
Glsi11g1190 685 MobiDBLite consensus disorder prediction 60 95 - -
Glsi11g1190 685 FunFam BEL1-like homeodomain protein 9 377 439 - -
Glsi11g1190 685 MobiDBLite consensus disorder prediction 460 506 - -
Glsi11g1190 685 SUPERFAMILY Homeodomain-like 375 440 IPR009057 -
Glsi11g1190 685 Pfam Homeobox KN domain 391 430 IPR008422 GO:0003677|GO:0006355
Glsi11g1190 685 MobiDBLite consensus disorder prediction 60 89 - -
Glsi11g1190 685 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 97 459 - -
Glsi11g1190 685 MobiDBLite consensus disorder prediction 220 256 - -
Glsi11g1190 685 SMART HOX_1 374 438 IPR001356 GO:0003677
Glsi11g1190 685 Coils Coil 193 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1190 Glsi-ChrGlsi11 7463178 7465581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1190 1 684 Homeobox Transcription Factor Family AT2G35940 50.133 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi11g1190 POX 1.8e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2528 02 75113642 75116065 Glsi11g1190 11 7463178 7465581 CCT
Glsi11g1190 11 7463178 7465581 Glsi11g1190 11 7463178 7465581 ECH