Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1184 ATGAAACTCGCAGCACTCGCCATGGAGGAGTGTTGTCTGAAGCTTCTTTCCGCACTCATTCTCTCACTTGCTGCAGTGGTTTTTAGTGCCACAGACCCAAATGATGCTAAGATTCTCAATCAGTTCAGAAAAGGTTTGGACAACCCGGAGATGTTGCCGTGGCCTGAAAATGGCGGAGACCCGTGTGGCAGTCCCCCTTGGAAGTATATCTTTTGCGAGGGCAACAGAGTTTCCCAGATTCAGGCCAAGAACTTGAACCTGAGTGGCCCTCTCCCTCACAATTTCAATCAGCTCTCCATGCTGGAAAACTTAGGCCTTCAGAACAATAAATTGAACGGGCCGTTGCCATCCTTCAGTGGATTATCCAAGTTGAAATATGCATATTTGGATTACAATGAGTTCGATTCGATTCCGGCCGATTTCTTTGATGGGCTTGTGAGTCTTGAAGTTATGGCATTGGATTACAATAATCTGAATGCTAGTACTGGATGGCAATTCCCTTCTCAGTTGCAGGGTTCAGCACAGTTAACCAATCTTTCCTGTATGAGTTGTAACTTGGCCGGTCCATTGCCGAGTTTTCTGGGGAAGATGCCCTCTCTGTCCATCTTGAAACTTTCAGGCAACAATTTGACCGGTGAAATCCCGACAACTTTTAACGGCACCATTTTGCAGGTTCTATGGCTGAATAATCAGCTGGGCAGCGGTCTCACTGGTCCTATTGACGTGGTGGCAACGATGACTTCGCTTACCAGTCTGTGGCTTCATGGGAACCAGTTCACAGGGACCATTCCGGTGAGCATTGGGGGATTAACTCTTCTGAAGGATCTCAATCTCAATGGTAATCAGCTCGTTGGCCTTGTCCCAGATGCTTTAGGTGAGATGAAATTGGACAATCTAGATTTGAACAATAACCACCTAATGGGTCCAATCCCAAATTTCACAGCAGCTAAATTCATTTATTCTTCGAATGCTTTTTGTCAATCCAAACCGGGGATGCCCTGCGCCTCTGAAGTCATGGCACTCCTGGATTTTCTTGCCGGGTTGAAATATCCTTCAAATCTAGTTGATTCGTGGACTGGTAATAACCCATGCGACGGGCCATGGTTGGGAATAAAGTGCGATGGCAATGGAAAGGTATCTATGATTAATTTGCCCAAGTTTAATCTTAATGGTACTCTAAGTCCTTCGGTTGCAAACTTGAGCTCTCTTGTAGAAATCAGATTGGGGGGTAATAATCTTAGCGGTCTAATACCCAGTAACTGGAGTAGCTTGACATCTCTGACCTTGTTGGACATAAGTGGCAATAACATTTCCCCTCCGCTCCCACATTTTAGTAGCAAATTGAGACTTGTGACTGACGGGAATCCTCTCTTAAATGGTAGCCCGGAAGCCCCTTCATCCAGGAACGGTTCATCATCTGGGGATGCTGAACCTTCACCTGATACTGCATCGTCACCATCAGCACACTCAGGTACCAAACCCAATAATACTATTGAACCACAACAATCCAAAAGGAAAAATTTGGTTGTAATTGTAGCCCCCATTGCTGGTGTAGCGGTTGCAGCTTTTCTGATCATTCCTCTGTACATATATTGTTTCAAGAGAAGAAAAGCTGCCTTCCAGGCTTCAAATTCATTAGTACTTCATCCTAGAGATCCATCTGATTCAGATAATATGGTTAAGATTGCTGTTGCTAACAATACCAATGGAAGCATTTCCACAATGACAGAGAGTGGGTCTGGAAGTAGACACAGCAGTGGCATGGGAGCGTCTCATGTCATAGAAGCTGGAAATCTTGTGATATCAGTTCAAGTTCTTCGAAATGTGACAAAGAATTTTGCCCCAGAGAATGAGCTTGGTCGTGGTGGATTTGGGGTCGTTTATAAGGGAGAGCTGGATGATGGAACTAAAATTGCAGTAAAACGAATGGAAGCTGGCGTGATTAGTAGCAAAGCCTTGAACGAATTCCAGGCTGAAATTGCAGTTTTATCGAAAGTCCGACACCGCCATCTGGTGTCTCTTTTGGGTTACTGCATTGAAGGTAATGAGAGGGTTCTAATTTATGAGTATATGCCACAAGGGGCTCTCAGTAAGCATCTTTTCCATTGGAAGAGCTTAAAACTGGAGCCCCTCTCTTGGAAGAGGAGGCTCAATATTGCTTTGGATGTTGCTAGAGGAATGGAGTATCTTCATAGTCTGGCTCACCAAAGCTTCATTCATAGAGATCTTAAGTCATCAAATATTTTGCTTGGGGATGATTTCAGGGCAAAAGTCTCAGATTTTGGGTTGGTAAAACTTGCTCCTGATGGCGAAAAATCTGTAGTGACCCGGCTTGCTGGGACATTTGGATACTTGGCGCCAGAATATGCAGTGACAGGAAAAATCACTACCAAAGCAGATGTTTTTAGTTTTGGGGTTGTCCTAATGGAGCTGTTGACTGGATTGATGGCGCTTGACGATGGCAGACCTGAGGAAAGTCAATACCTGGCTGCGTGGTTCTGGCATATAAAATCTAATAAGGAGAAACTAAGGGCTGCTATTGACTCAGCTCTCGACATAAAGGAAGAAACGTTCGAGAGCATTTGTGTCATTGCCGAGCTAGCTGGGCACTGCACTGCAAGAGAACCAAACCAACGGCCAGATATGGGCCATGCTGTGAATGTTCTGGCCCCCCTCGTTGAAAAATGGAAACCATTCGATGATGATGCTGCGGAGTATTCTGGCATTGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGCTGGCAGGAAGCAGAAGGAAAGGACCTCAGCTATGTGGACCTAGAAGACAGTAAGGATAGTATCCCCGCAAGGCCTACTGGATTTGCAGATTCTTTTACTTCTGCTGATGGCCGGTGA 2880 0.4528 MKLAALAMEECCLKLLSALILSLAAVVFSATDPNDAKILNQFRKGLDNPEMLPWPENGGDPCGSPPWKYIFCEGNRVSQIQAKNLNLSGPLPHNFNQLSMLENLGLQNNKLNGPLPSFSGLSKLKYAYLDYNEFDSIPADFFDGLVSLEVMALDYNNLNASTGWQFPSQLQGSAQLTNLSCMSCNLAGPLPSFLGKMPSLSILKLSGNNLTGEIPTTFNGTILQVLWLNNQLGSGLTGPIDVVATMTSLTSLWLHGNQFTGTIPVSIGGLTLLKDLNLNGNQLVGLVPDALGEMKLDNLDLNNNHLMGPIPNFTAAKFIYSSNAFCQSKPGMPCASEVMALLDFLAGLKYPSNLVDSWTGNNPCDGPWLGIKCDGNGKVSMINLPKFNLNGTLSPSVANLSSLVEIRLGGNNLSGLIPSNWSSLTSLTLLDISGNNISPPLPHFSSKLRLVTDGNPLLNGSPEAPSSRNGSSSGDAEPSPDTASSPSAHSGTKPNNTIEPQQSKRKNLVVIVAPIAGVAVAAFLIIPLYIYCFKRRKAAFQASNSLVLHPRDPSDSDNMVKIAVANNTNGSISTMTESGSGSRHSSGMGASHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALNEFQAEIAVLSKVRHRHLVSLLGYCIEGNERVLIYEYMPQGALSKHLFHWKSLKLEPLSWKRRLNIALDVARGMEYLHSLAHQSFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDDGRPEESQYLAAWFWHIKSNKEKLRAAIDSALDIKEETFESICVIAELAGHCTAREPNQRPDMGHAVNVLAPLVEKWKPFDDDAAEYSGIDYSLPLNQMVKGWQEAEGKDLSYVDLEDSKDSIPARPTGFADSFTSADGR 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1184 959 SUPERFAMILY L domain-like 30 315 - -
Glsi11g1184 959 FunFam receptor protein kinase TMK1 575 690 - -
Glsi11g1184 959 MobiDBLite consensus disorder prediction 455 502 - -
Glsi11g1184 959 SUPERFAMILY L domain-like 335 449 - -
Glsi11g1184 959 Gene3D Ribonuclease Inhibitor 336 461 IPR032675 -
Glsi11g1184 959 FunFam Receptor-like kinase TMK4 33 331 - -
Glsi11g1184 959 FunFam receptor protein kinase TMK1 691 908 - -
Glsi11g1184 959 Gene3D Transferase(Phosphotransferase) domain 1 691 906 - -
Glsi11g1184 959 Pfam Protein tyrosine and serine/threonine kinase 616 887 IPR001245 GO:0004672|GO:0006468
Glsi11g1184 959 SMART LRR_typ_2 424 448 IPR003591 -
Glsi11g1184 959 SMART LRR_typ_2 400 423 IPR003591 -
Glsi11g1184 959 SMART LRR_typ_2 145 168 IPR003591 -
Glsi11g1184 959 SMART LRR_typ_2 246 269 IPR003591 -
Glsi11g1184 959 SMART LRR_typ_2 121 144 IPR003591 -
Glsi11g1184 959 SMART LRR_typ_2 270 293 IPR003591 -
Glsi11g1184 959 SMART LRR_typ_2 197 220 IPR003591 -
Glsi11g1184 959 SMART serkin_6 613 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1184 959 ProSiteProfiles Protein kinase domain profile. 613 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1184 959 CDD STKc_IRAK 619 892 - -
Glsi11g1184 959 Pfam Leucine rich repeat 248 306 IPR001611 GO:0005515
Glsi11g1184 959 Pfam Leucine rich repeat 101 158 IPR001611 GO:0005515
Glsi11g1184 959 PANTHER OSJNBA0070M12.3 PROTEIN 17 959 - -
Glsi11g1184 959 MobiDBLite consensus disorder prediction 459 502 - -
Glsi11g1184 959 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Glsi11g1184 959 Gene3D Ribonuclease Inhibitor 32 331 IPR032675 -
Glsi11g1184 959 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Glsi11g1184 959 Pfam Leucine rich repeat N-terminal domain 336 374 IPR013210 -
Glsi11g1184 959 SUPERFAMILY Protein kinase-like (PK-like) 591 896 IPR011009 -
Glsi11g1184 959 MobiDBLite consensus disorder prediction 937 959 - -
Glsi11g1184 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Glsi11g1184 959 Gene3D Phosphorylase Kinase; domain 1 575 690 - -
Glsi11g1184 959 FunFam Leucine-rich repeat receptor-like kinase 336 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1184 Glsi-ChrGlsi11 7417967 7421558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1184 65 926 Receptor kinase-like Gene Family AT1G55610 29.799 1.14e-83 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Glsi11g1184 PK_Tyr_Ser-Thr 6.8e-48 CL0016